====== CB-5083 0.4μM R08 exp468 ====== ==== Mechanism of Action ==== Inhibits p97 AAA-ATPase * **Class / Subclass 1:** Proteostasis / Unfoldase Inhibitor ==== Technical Notes ==== * **PubChem Name:** %%CB-5083%% * **Synonyms:** N/A * **CAS #:** 1542705-92-9 * **PubChem CID:** [[https://pubchem.ncbi.nlm.nih.gov/compound/73051434|73051434]] * **IUPAC:** %%1-[4-(benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methylindole-4-carboxamide%% * **INCHI Name:** InChI=1S/C24H23N5O2/c1-15-12-18-17(22(25)30)8-5-9-21(18)29(15)24-27-20-10-11-31-14-19(20)23(28-24)26-13-16-6-3-2-4-7-16/h2-9,12H,10-11,13-14H2,1H3,(H2,25,30)(H,26,27,28) * **INCHI Key:** RDALZZCKQFLGJP-UHFFFAOYSA-N * **Molecular Weight:** 413.5 * **Canonical SMILES:** CC1=CC2=C(C=CC=C2N1C3=NC4=C(COCC4)C(=N3)NCC5=CC=CC=C5)C(=O)N * **Isomeric SMILES:** N/A * **Molecular Formula:** C24H23N5O2 {{:chemogenomics:structures:chem-0277.svg?nolink}} * **Supplier Name:** Med Chem Express * **Catalog #:** HY-12861 * **Lot #:** 19554 * **HRMS (ESI-TOF) m/z:** (M+H)+ Calcd for C24H23N5O2 414.19245; found 414.1939 * **Platform ID:** CB5083 * **Min:** -4.3018; **Max:** 99.5602 {{:chemogenomics:dose_response:dr_514.png?nolink&500 |}} \\ \\ \\ \\ |< 300px 100px 200px >| ^ IC ^ Concentration (µM) ^ | IC10 |0.2207 | | IC20 |0.3114 | | IC30 |0.3915 | | IC40 |0.4724 | | IC50 |0.5612 | | IC60 |0.6666 | | IC70 |0.8043 | | IC80 |1.0110 | | IC90 |1.4270 | \\ ==== Screen Summary ==== * **Round**: 08 * **Dose**: 400nM * **Days of incubation**: 8 * **Doublings**: 2.5 * **Numbers of reads**: 13284720 ==== Screen Results ==== ^Sensitive/Resistant hits (FDR<0.05)^CRANKS^Score Plot^Top 30 Genes^Screen Similarity^Top 30 Sensitive GO terms^Top 30 Resistant GO terms^ |24/42|[[https://files.tyerslab.com/files/public/chemogenomics/cranks/CB-5083_0.4uM_Round-8_exp468.txt|Scores]]|||||| {{:chemogenomics:cranks_plots:exp468.png?nolink}} ^Gene^CRANKS Score^FDR^ |[[:human_genes:U:UBXN1|UBXN1]]|-4.71|<0.01| |[[:human_genes:P:PLAA|PLAA]]|-4.48|<0.01| |[[:human_genes:A:ADK|ADK]]|-4.02|<0.01| |[[:human_genes:D:DDI2|DDI2]]|-3.76|<0.01| |[[:human_genes:S:SRF|SRF]]|-3.74|<0.01| |[[:human_genes:D:DERL1|DERL1]]|-3.37|<0.01| |[[:human_genes:N:NGLY1|NGLY1]]|-3.35|<0.01| |[[:human_genes:N:NPRL2|NPRL2]]|-3.13|<0.01| |[[:human_genes:B:BCL2L1|BCL2L1]]|-3.10|<0.01| |[[:human_genes:Z:ZBTB10|ZBTB10]]|-2.87|<0.01| |[[:human_genes:D:DDX54|DDX54]]|-2.82|0.02| |[[:human_genes:C:CHMP2A|CHMP2A]]|-2.74|0.06| |[[:human_genes:N:NPLOC4|NPLOC4]]|-2.73|0.03| |[[:human_genes:M:MBTD1|MBTD1]]|-2.68|0.01| |[[:human_genes:A:ASPSCR1|ASPSCR1]]|-2.57|0.02| |[[:human_genes:N:NSFL1C|NSFL1C]]|-2.55|0.02| |[[:human_genes:R:RAD23B|RAD23B]]|-2.54|0.03| |[[:human_genes:M:MTMR4|MTMR4]]|-2.53|0.02| |[[:human_genes:S:SOX4|SOX4]]|-2.51|0.07| |[[:human_genes:C:CSK|CSK]]|-2.50|0.02| |[[:human_genes:R:RANBP1|RANBP1]]|-2.49|0.02| |[[:human_genes:C:CDK1|CDK1]]|-2.48|0.07| |[[:human_genes:S:SYS1|SYS1]]|-2.45|0.08| |[[:human_genes:C:CCL16|CCL16]]|-2.42|0.06| |[[:human_genes:D:DRD2|DRD2]]|-2.42|0.03| |[[:human_genes:N:NPRL3|NPRL3]]|-2.42|0.09| |[[:human_genes:Z:ZFAND5|ZFAND5]]|-2.41|0.03| |[[:human_genes:C:COG7|COG7]]|-2.40|0.03| |[[:human_genes:D:DERL2|DERL2]]|-2.35|0.07| |[[:human_genes:Z:ZNF296|ZNF296]]|-2.35|0.04| |[[:human_genes:C:CCNL1|CCNL1]]|2.56|0.01| |[[:human_genes:R:ROMO1|ROMO1]]|2.58|0.04| |[[:human_genes:E:EBF1|EBF1]]|2.67|0.03| |[[:human_genes:F:FAM98B|FAM98B]]|2.67|0.01| |[[:human_genes:U:USP14|USP14]]|2.70|<0.01| |[[:human_genes:Y:YLPM1|YLPM1]]|2.75|0.04| |[[:human_genes:N:NUDT5|NUDT5]]|2.78|<0.01| |[[:human_genes:R:RPTOR|RPTOR]]|2.83|<0.01| |[[:human_genes:P:PCIF1|PCIF1]]|2.86|<0.01| |[[:human_genes:D:DPH5|DPH5]]|2.86|<0.01| |[[:human_genes:T:THRAP3|THRAP3]]|2.87|<0.01| |[[:human_genes:S:SLC7A1|SLC7A1]]|2.89|0.03| |[[:human_genes:U:UBR2|UBR2]]|2.92|<0.01| |[[:human_genes:T:THRA|THRA]]|2.92|<0.01| |[[:human_genes:S:SCAP|SCAP]]|3.00|<0.01| |[[:human_genes:I:IKZF1|IKZF1]]|3.17|0.00| |[[:human_genes:U:UBA6|UBA6]]|3.22|0.00| |[[:human_genes:D:DAZAP1|DAZAP1]]|3.25|0.00| |[[:human_genes:S:SRM|SRM]]|3.36|0.00| |[[:human_genes:U:UBE2Z|UBE2Z]]|3.37|0.00| |[[:human_genes:Z:ZBTB7A|ZBTB7A]]|3.39|0.00| |[[:human_genes:R:RPS25|RPS25]]|3.41|0.00| |[[:human_genes:S:SLC39A10|SLC39A10]]|3.43|0.00| |[[:human_genes:E:EIF4A1|EIF4A1]]|3.57|0.00| |[[:human_genes:D:DPH6|DPH6]]|3.64|0.00| |[[:human_genes:C:CNBP|CNBP]]|3.73|0.00| |[[:human_genes:I:IKZF2|IKZF2]]|3.93|0.00| |[[:human_genes:T:TPT1|TPT1]]|4.13|0.00| |[[:human_genes:T:TRIP12|TRIP12]]|4.80|0.00| |[[:human_genes:I:IMPDH2|IMPDH2]]|5.59|0.00| ^Screen^Correlation^Plot^ |[[:results:exp478|Doxorubicin 0.02μM R08 exp478]]|0.084|| |[[:results:exp502|Milciclib 2μM R08 exp502]]|0.083|| |[[:results:exp529|Thimerosal 0.85μM R08 exp529]]|0.08|| |[[:results:exp488|Hippuristanol 0.12μM R08 exp488]]|0.079|| |[[:results:exp445|∆-9-Tetrahydrocannabinol 30μM R08 exp445]]|0.078|| |[[:results:exp21|MLN-4924 0.2μM R00 exp21]]|0.075|| |[[:results:exp515|PU-H71 1μM R08 exp515]]|0.074|| |[[:results:exp234|Ethanol 0.01 R05 exp234]]|0.073|| |[[:results:exp443|SNS-032 15μM R08 exp443]]|0.071|| |[[:results:exp489|Hippuristanol 0.12μM R08 exp489 no dilution day6]]|0.07|| |[[:results:exp525|Sulforaphane 9μM R08 exp525]]|0.068|| |[[:results:exp290|LLY-283 2.6μM R06 exp290]]|0.068|| |[[:results:exp135|MS023 7μM R03 exp135]]|0.066|| |[[:results:exp524|Staurosporine 0.02μM R08 exp524]]|0.066|| |[[:results:exp416|Tubacin 1.6μM R07 exp416]]|0.062|| |[[:results:exp485|GSK626616 14μM R08 exp485]]|0.061|| |[[:results:exp500|LY2090314 0.003μM R08 exp500 no dilution day6]]|0.061|| |[[:results:exp505|ML-792 0.2μM R08 exp505]]|0.06|| |[[:results:exp512|Olaparib 4μM R08 exp512]]|0.06|| |[[:results:exp526|Sulforaphane 9μM R08 exp526 no dilution day6]]|0.059|| |[[:results:exp227|Cryptotanshinone 12μM R05 exp227]]|0.059|| |[[:results:exp466|Cannabidiol 20μM R08 exp466]]|0.059|| |[[:results:exp294|Nutlin-3A 1.6μM R06 exp294]]|0.058|| |[[:results:exp407|Thapsigargin 0.005μM R07 exp407]]|0.058|| |[[:results:exp474|CR131-b 0.005μM R08 exp474]]|0.057|| |[[:results:exp499|LY2090314 0.003μM R08 exp499]]|0.055|| |[[:results:exp80|RO-3307 4.7μM R02 exp80]]|0.055|| |[[:results:exp199|Etoposide 0.3μM R05 exp199]]|0.055|| |[[:results:exp374|Latrunculin-B 10μM R07 exp374]]|0.055|| |[[:results:exp85|UM0129480 7μM R02 exp85]]|0.054|| |[[:results:exp242|Radicicol 0.16μM R05 exp242]]|0.054|| |[[:results:exp357|Dorsomorphin 5μM R07 exp357]]|0.053|| |[[:results:exp435|JQ1 0.8μM R08 exp435]]|0.053|| |[[:results:exp84|UM0125461 0.74μM R02 exp84]]|0.051|| |[[:results:exp350|Deferoxamine 11μM R07 exp350]]|0.051|| |[[:results:exp6|Bortezomib 0.005μM R00 exp6]]|0.076|| |[[:results:exp440|Aphidicolin 0.4μM R08 exp440]]|0.071|| |[[:results:exp450|Artemisinin 50μM R08 exp450]]|0.069|| |[[:results:exp459|Bleomycin 5μM R08 exp459]]|0.061|| |[[:results:exp67|BVD-523 15μM R02 exp67]]|0.058|| |[[:results:exp456|Benzoate 20000μM R08 exp456]]|0.057|| |[[:results:exp214|2-Deoxy-D-glucose 800μM R05 exp214]]|0.056|| |[[:results:exp334|All-trans-Retinoic-Acid 40μM R07 exp334]]|0.055|| |[[:results:exp3|Actinomycin-D 0.001μM R00 exp3]]|0.055|| |[[:results:exp259|6-Thio-2-deoxyguanosine 2μM R06 exp259]]|0.053|| |[[:results:exp264|Arsenate 40μM R06 exp264]]|0.052|| |[[:results:exp211|AICAR 240μM R05 exp211]]|0.051|| {{:chemogenomics:comparison_plots:exp468_vs_exp478.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp502.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp529.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp488.png?nolink |}} {{:chemogenomics:comparison_plots:exp445_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp21_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp515.png?nolink |}} {{:chemogenomics:comparison_plots:exp234_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp443_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp489.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp525.png?nolink |}} {{:chemogenomics:comparison_plots:exp290_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp135_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp524.png?nolink |}} {{:chemogenomics:comparison_plots:exp416_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp485.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp500.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp505.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp512.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp526.png?nolink |}} {{:chemogenomics:comparison_plots:exp227_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp466_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp294_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp407_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp474.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp499.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp80.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp374_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp85.png?nolink |}} {{:chemogenomics:comparison_plots:exp242_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp357_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp435_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp84.png?nolink |}} {{:chemogenomics:comparison_plots:exp350_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp6.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp450_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp459_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp468_vs_exp67.png?nolink |}} {{:chemogenomics:comparison_plots:exp456_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp214_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp334_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp3_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp259_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp264_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp211_vs_exp468.png?nolink |}} ^GO Term^Fold Change^Genes^ |GATOR1 complex|571.34|NPRL2,NPRL3| |Hrd1p ubiquitin ligase ERAD-L complex|228.54|DERL1,DERL2| |endoplasmic reticulum to cytosol transport|100.83|DERL1,NPLOC4,DERL2| |retrograde protein transport, ER to cytosol|100.83|DERL1,NPLOC4,DERL2| |protein exit from endoplasmic reticulum|63.48|DERL1,NPLOC4,DERL2| |aorta morphogenesis|55.29|SRF,SOX4,NPRL3| |ubiquitin binding|34.63|UBXN1,PLAA,DDI2,NPLOC4,NSFL1C,RAD23B| |ubiquitin-like protein binding|29.05|UBXN1,PLAA,DDI2,NPLOC4,NSFL1C,RAD23B| |ERAD pathway|23.56|DERL1,NGLY1,NPLOC4,DERL2| |negative regulation of protein localization|14.00|BCL2L1,NSFL1C,CSK,DRD2,DERL2| |proteasomal protein catabolic process|13.53|UBXN1,PLAA,DDI2,DERL1,NGLY1,NPLOC4,NSFL1C,RAD23B,DERL2| |positive regulation of growth|11.85|PLAA,SRF,CDK1,DRD2,DERL2| |proteasome-mediated ubiquitin-dependent protein catabolic process|11.59|UBXN1,PLAA,DERL1,NPLOC4,NSFL1C,RAD23B,DERL2| |proteolysis involved in protein catabolic process|9.80|UBXN1,PLAA,DDI2,DERL1,NGLY1,CHMP2A,NPLOC4,NSFL1C,RAD23B,DERL2| |ubiquitin-dependent protein catabolic process|8.94|UBXN1,PLAA,DERL1,CHMP2A,NPLOC4,NSFL1C,RAD23B,DERL2| |modification-dependent protein catabolic process|8.77|UBXN1,PLAA,DERL1,CHMP2A,NPLOC4,NSFL1C,RAD23B,DERL2| |modification-dependent macromolecule catabolic process|8.59|UBXN1,PLAA,DERL1,CHMP2A,NPLOC4,NSFL1C,RAD23B,DERL2| |protein catabolic process|8.22|UBXN1,PLAA,DDI2,DERL1,NGLY1,CHMP2A,NPLOC4,NSFL1C,RAD23B,DERL2| |macromolecule catabolic process|6.20|UBXN1,PLAA,DDI2,DERL1,NGLY1,CHMP2A,NPLOC4,NSFL1C,RAD23B,DERL2| No GO term hits below threshold. (FDR <0.05)