====== Chloroquine 32μM R08 exp470 ======
==== Mechanism of Action ====
Lysosomotropic agent, prevents sequestration of heme into hemozoin, forms toxic complex with heme, enhances hematin-induced red blood cell lysis, also intercalates into DNA
  * **<color #00a2e8>Class / Subclass 1:</color>** Infectious Disease / Antimalarial
  * **<color #00a2e8>Class / Subclass 2:</color>** DNA Damage, Repair and Replication / Intercalating Agent
  * **<color #00a2e8>Class / Subclass 3:</color>** Proteostasis / Autophagy Inhibitor


==== Technical Notes ====
<accordion collapsed='true'>
<panel title='Compound References' collapsed='true'>
    * **<color #00a2e8>PubChem Name:</color>** %%Chloroquine phosphate%%
    * **<color #00a2e8>Synonyms:</color>** N/A
    * **<color #00a2e8>CAS #:</color>** 50-63-5
    * **<color #00a2e8>PubChem CID:</color>** [[https://pubchem.ncbi.nlm.nih.gov/compound/64927|64927]]
    * **<color #00a2e8>IUPAC:</color>** %%4-N-(7-chloroquinolin-4-yl)-1-N,1-N-diethylpentane-1,4-diamine;phosphoric acid%%
    * **<color #00a2e8>INCHI Name:</color>** InChI=1S/C18H26ClN3.2H3O4P/c1-4-22(5-2)12-6-7-14(3)21-17-10-11-20-18-13-15(19)8-9-16(17)18;2*1-5(2,3)4/h8-11,13-14H,4-7,12H2,1-3H3,(H,20,21);2*(H3,1,2,3,4)
    * **<color #00a2e8>INCHI Key:</color>** QKICWELGRMTQCR-UHFFFAOYSA-N
    * **<color #00a2e8>Molecular Weight:</color>** 515.9
    * **<color #00a2e8>Canonical SMILES:</color>** CCN(CC)CCCC(C)NC1=C2C=CC(=CC2=NC=C1)Cl.OP(=O)(O)O.OP(=O)(O)O
    * **<color #00a2e8>Isomeric SMILES:</color>** N/A
    * **<color #00a2e8>Molecular Formula:</color>** C18H32ClN3O8P2
{{:chemogenomics:structures:chem-0279.svg?nolink}}
</panel>


<panel title='Compound Supplier' collapsed='true'>
    * **<color #00a2e8>Supplier Name:</color>** Med Chem Express
    * **<color #00a2e8>Catalog #:</color>** HY-17589
    * **<color #00a2e8>Lot #:</color>** 16566
</panel>


<panel title='Compound Characterization' collapsed='true'>
Characterization data not available.
</panel>


<panel title='Dose Response Curve' collapsed='true'>
    * **<color #00a2e8>Platform ID:</color>** Chloroquine
    * **<color #00a2e8>Min:</color>** -16.1830; **<color #00a2e8>Max:</color>** 87.3046
{{:chemogenomics:dose_response:dr_516.png?nolink&500 |}}
\\ 
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|< 300px 100px 200px >|
^ IC   ^ Concentration (µM) ^
| IC10  |19.0600    |
| IC20  |24.1000    |
| IC30  |28.1600    |
| IC40  |32.0000    |
| IC50  |35.9900    |
| IC60  |40.4600    |
| IC70  |45.9800    |
| IC80  |53.7400    |
| IC90  |67.9500    |
\\ 
</panel>
</accordion>
==== Screen Summary ====
    * **<color #00a2e8>Round</color>**: 08
    * **<color #00a2e8>Dose</color>**: 32µM
    * **<color #00a2e8>Days of incubation</color>**: 8
    * **<color #00a2e8>Doublings</color>**: 5.2
    * **<color #00a2e8>Numbers of reads</color>**: 13747420


==== Screen Results ====


^Sensitive/Resistant hits (FDR<0.05)^CRANKS^Score Plot^Top 30 Genes^Screen Similarity^Top 30 Sensitive GO terms^Top 30 Resistant GO terms^
|13/0|<color #e85500>[[https://files.tyerslab.com/files/public/chemogenomics/cranks/Chloroquine_32uM_Round-8_exp470.txt|Scores]]</color>|<button type="primary" size="sm" modal="ScorePlot">View</button>|<button type="primary" size="sm" modal="modal_hits">View</button>|<button type="primary" size="sm" modal="modal_screen_similarity">View</button>|<button type="default" size="sm" modal="modal_go_sensitive">View</button>|<button type="primary" size="sm" modal="modal_go_resistant">View</button>|
<modal id='ScorePlot' size='lg' title='Chloroquine 32μM R08 exp470'>
{{:chemogenomics:cranks_plots:exp470.png?nolink}}
</modal>


<modal id="modal_hits" size="sm" title="Top 30 S/R Genes">
^Gene^CRANKS Score^FDR^
|[[:human_genes:O:ODC1|ODC1]]|-4.41|<0.01|
|[[:human_genes:S:SLC5A3|SLC5A3]]|-3.88|<0.01|
|[[:human_genes:F:FLVCR1|FLVCR1]]|-3.84|<0.01|
|[[:human_genes:M:MTMR4|MTMR4]]|-3.22|<0.01|
|[[:human_genes:D:DPAGT1|DPAGT1]]|-3.13|<0.01|
|[[:human_genes:S:SLC7A6|SLC7A6]]|-3.06|<0.01|
|[[:human_genes:C:CDIPT|CDIPT]]|-2.93|0.05|
|[[:human_genes:A:ADAMTS3|ADAMTS3]]|-2.70|0.01|
|[[:human_genes:B:BRD1|BRD1]]|-2.69|0.01|
|[[:human_genes:R:RAB7A|RAB7A]]|-2.67|0.01|
|[[:human_genes:A:ALG9|ALG9]]|-2.53|0.03|
|[[:human_genes:S:SHOC2|SHOC2]]|-2.51|0.05|
|[[:human_genes:F:F8A3|F8A3]]|-2.50|0.03|
|[[:human_genes:K:KIAA2013|KIAA2013]]|-2.47|0.06|
|[[:human_genes:F:F8A1|F8A1]]|-2.47|0.03|
|[[:human_genes:F:F8A2|F8A2]]|-2.45|0.04|
|[[:human_genes:C:COMMD2|COMMD2]]|-2.40|0.08|
|[[:human_genes:A:ANKH|ANKH]]|-2.38|0.05|
|[[:human_genes:M:MGAT1|MGAT1]]|-2.34|0.09|
|[[:human_genes:S:SLC25A1|SLC25A1]]|-2.33|0.06|
|[[:human_genes:Z:ZBED4|ZBED4]]|-2.33|0.15|
|[[:human_genes:P:PROSER1|PROSER1]]|-2.33|0.10|
|[[:human_genes:P:PPCS|PPCS]]|-2.31|0.10|
|[[:human_genes:W:WDR81|WDR81]]|-2.29|0.11|
|[[:human_genes:M:MED31|MED31]]|-2.28|0.07|
|[[:human_genes:A:ARID4B|ARID4B]]|-2.26|0.12|
|[[:human_genes:T:TLR7|TLR7]]|-2.25|0.08|
|[[:human_genes:T:TCF4|TCF4]]|-2.23|0.09|
|[[:human_genes:A:AHCYL1|AHCYL1]]|-2.21|0.14|
|[[:human_genes:G:GMPPB|GMPPB]]|-2.17|0.57|
|[[:human_genes:R:RCC2|RCC2]]|2.11|0.14|
|[[:human_genes:M:MTO1|MTO1]]|2.12|0.14|
|[[:human_genes:P:PTPN6|PTPN6]]|2.12|0.14|
|[[:human_genes:P:PET117|PET117]]|2.15|0.14|
|[[:human_genes:C:CRNKL1|CRNKL1]]|2.16|0.25|
|[[:human_genes:N:NDUFA2|NDUFA2]]|2.16|0.17|
|[[:human_genes:C:CNBD2|CNBD2]]|2.16|0.14|
|[[:human_genes:P:PNO1|PNO1]]|2.17|0.43|
|[[:human_genes:S:SELRC1|SELRC1]]|2.17|0.14|
|[[:human_genes:F:FAM65A|FAM65A]]|2.21|0.15|
|[[:human_genes:V:VPREB3|VPREB3]]|2.22|0.13|
|[[:human_genes:Y:YBEY|YBEY]]|2.22|0.13|
|[[:human_genes:T:TMEM52B|TMEM52B]]|2.26|0.14|
|[[:human_genes:F:FASTKD2|FASTKD2]]|2.29|0.14|
|[[:human_genes:N:NDUFA1|NDUFA1]]|2.32|0.14|
|[[:human_genes:C:CD72|CD72]]|2.33|0.10|
|[[:human_genes:K:KDM6A|KDM6A]]|2.34|0.10|
|[[:human_genes:D:DEPDC7|DEPDC7]]|2.34|0.10|
|[[:human_genes:A:ALDH18A1|ALDH18A1]]|2.36|0.13|
|[[:human_genes:M:MALSU1|MALSU1]]|2.38|0.10|
|[[:human_genes:A:ACAD9|ACAD9]]|2.40|0.10|
|[[:human_genes:P:PDE12|PDE12]]|2.45|0.11|
|[[:human_genes:C:CDK2|CDK2]]|2.47|0.09|
|[[:human_genes:M:MRPL1|MRPL1]]|2.49|0.14|
|[[:human_genes:N:NDUFAF6|NDUFAF6]]|2.52|0.09|
|[[:human_genes:L:LRPPRC|LRPPRC]]|2.58|0.11|
|[[:human_genes:S:SHMT2|SHMT2]]|2.60|0.11|
|[[:human_genes:K:KCND3|KCND3]]|2.63|0.09|
|[[:human_genes:G:GNA13|GNA13]]|2.66|0.07|
|[[:human_genes:H:HSP90B1|HSP90B1]]|2.78|0.07|
</modal>


<modal id="modal_screen_similarity" size="lg" title="Correlated Screens">
^Screen^Correlation^Plot^
|[[:results:exp490|Hydroxychloroquine 30μM R08 exp490]]|0.098|<button type="primary" size="small" modal="1">View</button>|
|[[:results:exp483|FTY720 3μM R08 exp483]]|0.093|<button type="primary" size="small" modal="2">View</button>|
|[[:results:exp508|NN-Dimethylsphingosine 2.5μM R08 exp508]]|0.079|<button type="primary" size="small" modal="3">View</button>|
|[[:results:exp344|Chlorpromazine 10μM R07 exp344]]|0.067|<button type="primary" size="small" modal="4">View</button>|
|[[:results:exp530|Thioridazine 5μM R08 exp530]]|0.065|<button type="primary" size="small" modal="5">View</button>|
|[[:results:exp68|Clomiphene 4.4μM R02 exp68]]|0.057|<button type="primary" size="small" modal="6">View</button>|
|[[:results:exp492|iCRT14 30μM R08 exp492]]|0.057|<button type="primary" size="small" modal="7">View</button>|
|[[:results:exp510|Nicotine 3000μM R08 exp510]]|0.055|<button type="primary" size="small" modal="8">View</button>|
|[[:results:exp433|LJH685 50μM R08 exp433]]|0.053|<button type="primary" size="small" modal="9">View</button>|
|[[:results:exp83|Trametinib 10μM R02 exp83]]|0.052|<button type="primary" size="small" modal="10">View</button>|
|[[:results:exp434|Vemurafenib 6.6μM R08 exp434]]|0.051|<button type="primary" size="small" modal="11">View</button>|
|[[:results:exp442|Ibrutinib 10μM R08 exp442]]|0.051|<button type="primary" size="small" modal="12">View</button>|
|[[:results:exp454|Bafilomycin-A1 0.009μM R08 exp454]]|0.088|<button type="primary" size="small" modal="13">View</button>|
|[[:results:exp452|Azithromycin 100μM R08 exp452]]|0.072|<button type="primary" size="small" modal="14">View</button>|
|[[:results:exp453|B02 10μM R08 exp453]]|0.057|<button type="primary" size="small" modal="15">View</button>|
|[[:results:exp461|BS-181 20μM R08 exp461]]|0.052|<button type="primary" size="small" modal="16">View</button>|
</modal>


<modal id="1" size="lg" title="Chloroquine 32μM R08 exp470  vs  Hydroxychloroquine 30μM R08 exp490">
{{:chemogenomics:comparison_plots:exp470_vs_exp490.png?nolink |}}
</modal>

<modal id="2" size="lg" title="Chloroquine 32μM R08 exp470  vs  FTY720 3μM R08 exp483">
{{:chemogenomics:comparison_plots:exp470_vs_exp483.png?nolink |}}
</modal>

<modal id="3" size="lg" title="Chloroquine 32μM R08 exp470  vs  NN-Dimethylsphingosine 2.5μM R08 exp508">
{{:chemogenomics:comparison_plots:exp470_vs_exp508.png?nolink |}}
</modal>

<modal id="4" size="lg" title="Chloroquine 32μM R08 exp470  vs  Chlorpromazine 10μM R07 exp344">
{{:chemogenomics:comparison_plots:exp344_vs_exp470.png?nolink |}}
</modal>

<modal id="5" size="lg" title="Chloroquine 32μM R08 exp470  vs  Thioridazine 5μM R08 exp530">
{{:chemogenomics:comparison_plots:exp470_vs_exp530.png?nolink |}}
</modal>

<modal id="6" size="lg" title="Chloroquine 32μM R08 exp470  vs  Clomiphene 4.4μM R02 exp68">
{{:chemogenomics:comparison_plots:exp470_vs_exp68.png?nolink |}}
</modal>

<modal id="7" size="lg" title="Chloroquine 32μM R08 exp470  vs  iCRT14 30μM R08 exp492">
{{:chemogenomics:comparison_plots:exp470_vs_exp492.png?nolink |}}
</modal>

<modal id="8" size="lg" title="Chloroquine 32μM R08 exp470  vs  Nicotine 3000μM R08 exp510">
{{:chemogenomics:comparison_plots:exp470_vs_exp510.png?nolink |}}
</modal>

<modal id="9" size="lg" title="Chloroquine 32μM R08 exp470  vs  LJH685 50μM R08 exp433">
{{:chemogenomics:comparison_plots:exp433_vs_exp470.png?nolink |}}
</modal>

<modal id="10" size="lg" title="Chloroquine 32μM R08 exp470  vs  Trametinib 10μM R02 exp83">
{{:chemogenomics:comparison_plots:exp470_vs_exp83.png?nolink |}}
</modal>

<modal id="11" size="lg" title="Chloroquine 32μM R08 exp470  vs  Vemurafenib 6.6μM R08 exp434">
{{:chemogenomics:comparison_plots:exp434_vs_exp470.png?nolink |}}
</modal>

<modal id="12" size="lg" title="Chloroquine 32μM R08 exp470  vs  Ibrutinib 10μM R08 exp442">
{{:chemogenomics:comparison_plots:exp442_vs_exp470.png?nolink |}}
</modal>

<modal id="13" size="lg" title="Bafilomycin-A1 0.009μM R08 exp454  vs  Chloroquine 32μM R08 exp470">
{{:chemogenomics:comparison_plots:exp454_vs_exp470.png?nolink |}}
</modal>

<modal id="14" size="lg" title="Azithromycin 100μM R08 exp452  vs  Chloroquine 32μM R08 exp470">
{{:chemogenomics:comparison_plots:exp452_vs_exp470.png?nolink |}}
</modal>

<modal id="15" size="lg" title="B02 10μM R08 exp453  vs  Chloroquine 32μM R08 exp470">
{{:chemogenomics:comparison_plots:exp453_vs_exp470.png?nolink |}}
</modal>

<modal id="16" size="lg" title="BS-181 20μM R08 exp461  vs  Chloroquine 32μM R08 exp470">
{{:chemogenomics:comparison_plots:exp461_vs_exp470.png?nolink |}}
</modal>



<modal id="modal_go_sensitive" size="lg" title="Top 30 sensitive GO terms">No GO term hits below threshold. (FDR <0.05)</modal>
<modal id="modal_go_resistant" size="lg" title="Top 30 resistant GO terms">
^GO Term^Fold Change^Genes^
|mitochondrial RNA catabolic process|368.20|LRPPRC,PDE12|
|regulation of mitochondrial gene expression|78.90|SHMT2,LRPPRC,MALSU1,FASTKD2|
|regulation of mitochondrial translation|69.04|SHMT2,LRPPRC,MALSU1|
|mitochondrial RNA metabolic process|51.38|LRPPRC,PDE12,FASTKD2,MTO1|
|mitochondrial respiratory chain complex I assembly|42.48|NDUFAF6,ACAD9,NDUFA1,NDUFA2|
|NADH dehydrogenase complex assembly|42.48|NDUFAF6,ACAD9,NDUFA1,NDUFA2|
|mitochondrial respiratory chain complex assembly|31.74|NDUFAF6,ACAD9,NDUFA1,NDUFA2,PET117|
|organelle inner membrane|8.66|SHMT2,LRPPRC,NDUFAF6,MRPL1,ACAD9,ALDH18A1,NDUFA1,NDUFA2|
|mitochondrial inner membrane|8.44|SHMT2,NDUFAF6,MRPL1,ACAD9,ALDH18A1,NDUFA1,NDUFA2|
</modal>