======= TSEN54 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: TSEN54
  * **<color #00a2e8>Official Name</color>**: tRNA splicing endonuclease subunit 54
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=283989|283989]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/Q7Z6J9|Q7Z6J9]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=TSEN54&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20TSEN54|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/608755|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**:  This gene encodes a subunit of the tRNA splicing endonuclease complex, which catalyzes the removal of introns from precursor tRNAs. The complex is also implicated in pre-mRNA 3-prime end processing. Mutations in this gene result in pontocerebellar hypoplasia type 2.[provided by RefSeq, Oct 2009]. 
  * **<color #00a2e8>UniProt Summary</color>**:  Non-catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. The tRNA splicing endonuclease is also involved in mRNA processing via its association with pre-mRNA 3'-end processing factors, establishing a link between pre-tRNA splicing and pre-mRNA 3'-end formation, suggesting that the endonuclease subunits function in multiple RNA-processing events. {ECO:0000269|PubMed:15109492}.

<button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
|tRNA int end N2|
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|tRNA-type intron splice site recognition and cleavage|
|tRNA-intron endonuclease activity|
|tRNA-intron endonuclease complex|
|tRNA splicing, via endonucleolytic cleavage and ligation|
|RNA splicing, via endonucleolytic cleavage and ligation|
|RNA phosphodiester bond hydrolysis, endonucleolytic|
|tRNA processing|
|RNA phosphodiester bond hydrolysis|
|tRNA metabolic process|
|nucleic acid phosphodiester bond hydrolysis|
|ncRNA processing|
|RNA splicing|
|ncRNA metabolic process|
|mRNA processing|
|mRNA metabolic process|
|nucleolus|
|RNA processing|
|RNA metabolic process|
|gene expression|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='primary' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp94|Nocodazole 0.1μM R03 exp94]]|1.71|
|[[:results:exp93|DABN racemic mixture R03 exp93]]|1.77|
|[[:results:exp126|GSK461364A 0.1μM R03 exp126]]|1.86|
|[[:results:exp459|Bleomycin 5μM R08 exp459]]|1.87|
|[[:results:exp96|BI-2536 0.02μM R03 exp96]]|1.91|
|[[:results:exp400|Senexin-A 25μM R07 exp400]]|2.03|
|[[:results:exp259|6-Thio-2-deoxyguanosine 2μM R06 exp259]]|2.08|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
^Gene^Correlation^
|[[:human genes:t:thg1l|THG1L]]|0.637|
|[[:human genes:u:uap1|UAP1]]|0.605|
|[[:human genes:r:rpp21|RPP21]]|0.603|
|[[:human genes:g:gmppb|GMPPB]]|0.583|
|[[:human genes:g:gfpt1|GFPT1]]|0.581|
|[[:human genes:p:pmm2|PMM2]]|0.578|
|[[:human genes:d:dpagt1|DPAGT1]]|0.574|
|[[:human genes:r:rnmt|RNMT]]|0.573|
|[[:human genes:p:pelo|PELO]]|0.571|
|[[:human genes:a:alg1|ALG1]]|0.567|
|[[:human genes:g:gnb1l|GNB1L]]|0.563|
|[[:human genes:d:dr1|DR1]]|0.554|
|[[:human genes:m:med16|MED16]]|0.535|
|[[:human genes:a:atxn10|ATXN10]]|0.535|
|[[:human genes:t:tti2|TTI2]]|0.532|
|[[:human genes:s:srp14|SRP14]]|0.527|
|[[:human genes:r:rptor|RPTOR]]|0.527|
|[[:human genes:r:rtcb|RTCB]]|0.523|
|[[:human genes:v:vezt|VEZT]]|0.521|
|[[:human genes:g:gtf3c3|GTF3C3]]|0.52|
|[[:human genes:a:adsl|ADSL]]|0.519|
|[[:human genes:a:alg13|ALG13]]|0.515|
|[[:human genes:g:gtf3c4|GTF3C4]]|0.51|
|[[:human genes:t:triap1|TRIAP1]]|0.508|
|[[:human genes:p:polr3h|POLR3H]]|0.507|
|[[:human genes:t:telo2|TELO2]]|0.504|
|[[:human genes:e:exoc4|EXOC4]]|0.502|
|[[:human genes:u:urm1|URM1]]|0.501|
|[[:human genes:d:dohh|DOHH]]|0.499|
|[[:human genes:r:rabggtb|RABGGTB]]|0.494|
|[[:human genes:t:tsen34|TSEN34]]|0.494|
|[[:human genes:e:elp2|ELP2]]|0.493|
|[[:human genes:e:elp3|ELP3]]|0.492|
|[[:human genes:g:gemin8|GEMIN8]]|0.487|
|[[:human genes:p:pyroxd1|PYROXD1]]|0.485|
|[[:human genes:r:rpia|RPIA]]|0.484|
|[[:human genes:g:gtf3c2|GTF3C2]]|0.482|
|[[:human genes:d:ddx1|DDX1]]|0.48|
|[[:human genes:o:oraov1|ORAOV1]]|0.48|
|[[:human genes:a:alg2|ALG2]]|0.48|
|[[:human genes:t:tbcb|TBCB]]|0.479|
|[[:human genes:e:ercc2|ERCC2]]|0.478|
|[[:human genes:c:csnk2b|CSNK2B]]|0.477|
|[[:human genes:g:gtf3c6|GTF3C6]]|0.477|
|[[:human genes:c:ctu1|CTU1]]|0.475|
|[[:human genes:t:ten1|TEN1]]|0.474|
|[[:human genes:g:gtf3c5|GTF3C5]]|0.474|
|[[:human genes:r:rft1|RFT1]]|0.473|
|[[:human genes:o:osgep|OSGEP]]|0.471|
|[[:human genes:h:hspd1|HSPD1]]|0.47|
|[[:human genes:g:gemin6|GEMIN6]]|0.47|
|[[:human genes:p:ppp2r3c|PPP2R3C]]|0.469|
|[[:human genes:t:trmt5|TRMT5]]|0.468|
|[[:human genes:d:dolk|DOLK]]|0.468|
|[[:human genes:v:vhl|VHL]]|0.467|
|[[:human genes:p:ppp4c|PPP4C]]|0.462|
|[[:human genes:s:ssb|SSB]]|0.461|
|[[:human genes:f:fh|FH]]|0.461|
|[[:human genes:c:ccdc101|CCDC101]]|0.46|
|[[:human genes:d:dpf2|DPF2]]|0.46|
|[[:human genes:t:tamm41|TAMM41]]|0.459|
|[[:human genes:e:eef1e1|EEF1E1]]|0.458|
|[[:human genes:s:sdha|SDHA]]|0.458|
|[[:human genes:l:lsm10|LSM10]]|0.457|
|[[:human genes:a:aars|AARS]]|0.457|
|[[:human genes:t:tubd1|TUBD1]]|0.456|
|[[:human genes:c:ctc1|CTC1]]|0.455|
|[[:human genes:m:mtor|MTOR]]|0.455|
|[[:human genes:a:alg5|ALG5]]|0.454|
|[[:human genes:d:dad1|DAD1]]|0.454|
|[[:human genes:n:nae1|NAE1]]|0.453|
|[[:human genes:a:atp5j|ATP5J]]|0.452|
|[[:human genes:d:ddost|DDOST]]|0.452|
|[[:human genes:f:fntb|FNTB]]|0.45|
|[[:human genes:c:c15orf41|C15orf41]]|0.45|
|[[:human genes:r:rpe|RPE]]|0.449|
|[[:human genes:z:znf259|ZNF259]]|0.449|
|[[:human genes:f:fnta|FNTA]]|0.448|
|[[:human genes:w:wdr1|WDR1]]|0.447|
|[[:human genes:u:utp23|UTP23]]|0.447|
|[[:human genes:s:slc25a19|SLC25A19]]|0.447|
|[[:human genes:p:ppcs|PPCS]]|0.445|
|[[:human genes:u:uhrf1|UHRF1]]|0.443|
|[[:human genes:t:tbca|TBCA]]|0.442|
|[[:human genes:n:nsmce1|NSMCE1]]|0.442|
|[[:human genes:b:bub3|BUB3]]|0.442|
|[[:human genes:z:zbtb11|ZBTB11]]|0.441|
|[[:human genes:u:uxt|UXT]]|0.441|
|[[:human genes:e:eif4e|EIF4E]]|0.441|
|[[:human genes:p:pam16|PAM16]]|0.441|
|[[:human genes:c:c14orf80|C14orf80]]|0.439|
|[[:human genes:h:hars|HARS]]|0.439|
|[[:human genes:r:rad1|RAD1]]|0.438|
|[[:human genes:b:bap1|BAP1]]|0.437|
|[[:human genes:h:haus8|HAUS8]]|0.436|
|[[:human genes:g:gemin7|GEMIN7]]|0.436|
|[[:human genes:d:ddx20|DDX20]]|0.435|
|[[:human genes:a:atic|ATIC]]|0.433|
|[[:human genes:e:eif3f|EIF3F]]|0.431|
|[[:human genes:m:med23|MED23]]|0.431|
|[[:human genes:t:trnt1|TRNT1]]|0.431|
|[[:human genes:s:srp72|SRP72]]|0.43|
|[[:human genes:e:eny2|ENY2]]|0.429|
|[[:human genes:d:dnlz|DNLZ]]|0.429|
|[[:human genes:p:pdap1|PDAP1]]|0.428|
|[[:human genes:r:rpn1|RPN1]]|0.427|
|[[:human genes:p:ppp6c|PPP6C]]|0.427|
|[[:human genes:a:atp5o|ATP5O]]|0.425|
|[[:human genes:d:dhps|DHPS]]|0.424|
|[[:human genes:d:ddx39a|DDX39A]]|0.423|
|[[:human genes:k:kdsr|KDSR]]|0.421|
|[[:human genes:m:mocs3|MOCS3]]|0.421|
|[[:human genes:w:wdr92|WDR92]]|0.42|
|[[:human genes:t:tprkb|TPRKB]]|0.419|
|[[:human genes:d:dhrsx|DHRSX]]|0.419|
|[[:human genes:t:ttc4|TTC4]]|0.418|
|[[:human genes:t:tti1|TTI1]]|0.418|
|[[:human genes:s:snapc5|SNAPC5]]|0.417|
|[[:human genes:c:cep57|CEP57]]|0.415|
|[[:human genes:c:cdipt|CDIPT]]|0.415|
|[[:human genes:p:pdcd5|PDCD5]]|0.414|
|[[:human genes:z:zrsr2|ZRSR2]]|0.414|
|[[:human genes:e:eprs|EPRS]]|0.413|
|[[:human genes:t:tkt|TKT]]|0.412|
|[[:human genes:r:rfk|RFK]]|0.411|
|[[:human genes:g:gemin5|GEMIN5]]|0.411|
|[[:human genes:e:exoc3|EXOC3]]|0.41|
|[[:human genes:m:mllt1|MLLT1]]|0.41|
|[[:human genes:a:atp2a2|ATP2A2]]|0.409|
|[[:human genes:s:sec62|SEC62]]|0.409|
|[[:human genes:t:txnrd1|TXNRD1]]|0.409|
|[[:human genes:m:mis18a|MIS18A]]|0.408|
|[[:human genes:a:alg6|ALG6]]|0.407|
|[[:human genes:r:rbm14|RBM14]]|0.407|
|[[:human genes:r:rnaseh2b|RNASEH2B]]|0.407|
|[[:human genes:c:c14orf166|C14orf166]]|0.407|
|[[:human genes:t:trmt61a|TRMT61A]]|0.405|
|[[:human genes:y:yars|YARS]]|0.405|
|[[:human genes:g:gtf3a|GTF3A]]|0.404|
|[[:human genes:v:vrk1|VRK1]]|0.404|
|[[:human genes:d:ddx55|DDX55]]|0.403|
|[[:human genes:t:trip12|TRIP12]]|0.402|
|[[:human genes:c:c16orf59|C16orf59]]|0.402|
|[[:human genes:m:med25|MED25]]|0.402|
|[[:human genes:s:slc25a26|SLC25A26]]|0.401|
|[[:human genes:s:sec61g|SEC61G]]|0.401|
|[[:human genes:p:pisd|PISD]]|0.4|
|[[:human genes:n:n6amt1|N6AMT1]]|0.4|
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 314/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|0/1|
|bile duct|11/28|
|blood|10/28|
|bone|10/26|
|breast|6/33|
|central nervous system|41/56|
|cervix|2/4|
|colorectal|3/17|
|esophagus|2/13|
|fibroblast|0/1|
|gastric|6/16|
|kidney|8/21|
|liver|6/20|
|lung|31/75|
|lymphocyte|7/16|
|ovary|10/26|
|pancreas|7/24|
|peripheral nervous system|3/16|
|plasma cell|10/15|
|prostate|0/1|
|skin|13/24|
|soft tissue|1/9|
|thyroid|2/2|
|upper aerodigestive|15/22|
|urinary tract|21/29|
|uterus|2/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 630
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 5.48 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='TSEN54 Expression in NALM6 Cells: 5.48'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>