======= VAMP4 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: VAMP4
  * **<color #00a2e8>Official Name</color>**: vesicle associated membrane protein 4
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=8674|8674]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/O75379|O75379]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=VAMP4&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20VAMP4|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/606909|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**: N/A
  * **<color #00a2e8>UniProt Summary</color>**:  Involved in the pathway that functions to remove an inhibitor (probably synaptotagmin-4) of calcium-triggered exocytosis during the maturation of secretory granules. May be a marker for this sorting pathway that is critical for remodeling the secretory response of granule.

<button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
|Synaptobrevin|
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|synaptic vesicle to endosome fusion|
|synaptic vesicle endosomal processing|
|SNARE complex assembly|
|Golgi ribbon formation|
|regulation of synaptic vesicle endocytosis|
|regulation of synaptic vesicle recycling|
|integral component of synaptic vesicle membrane|
|Golgi to plasma membrane protein transport|
|establishment of protein localization to plasma membrane|
|clathrin-coated vesicle membrane|
|Golgi to plasma membrane transport|
|vesicle fusion|
|organelle membrane fusion|
|transport vesicle|
|trans-Golgi network membrane|
|vesicle-mediated transport to the plasma membrane|
|organelle fusion|
|post-Golgi vesicle-mediated transport|
|regulation of synaptic vesicle cycle|
|membrane fusion|
|Golgi organization|
|protein localization to plasma membrane|
|regulation of endocytosis|
|endoplasmic reticulum to Golgi vesicle-mediated transport|
|protein localization to cell periphery|
|endosomal transport|
|lysosome|
|establishment of protein localization to membrane|
|endosome|
|vesicle organization|
|Golgi vesicle transport|
|endomembrane system organization|
|microtubule cytoskeleton organization|
|protein localization to membrane|
|regulation of vesicle-mediated transport|
|cell surface|
|Golgi membrane|
|microtubule-based process|
|cellular protein-containing complex assembly|
|membrane organization|
|regulation of cellular localization|
|Golgi apparatus|
|cytoskeleton organization|
|protein transport|
|intracellular transport|
|peptide transport|
|protein-containing complex assembly|
|amide transport|
|cellular protein localization|
|cellular macromolecule localization|
|establishment of protein localization|
|establishment of localization in cell|
|nitrogen compound transport|
|protein-containing complex subunit organization|
|regulation of transport|
|vesicle-mediated transport|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='default' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp106|UM131593 0.2μM R03 exp106]]|2.06|
|[[:results:exp107|UMK57 0.6μM R03 exp107]]|2.23|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
No correlation found to any other genes in chemogenomics.
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 0/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|0/1|
|bile duct|0/28|
|blood|0/28|
|bone|0/26|
|breast|0/33|
|central nervous system|0/56|
|cervix|0/4|
|colorectal|0/17|
|esophagus|0/13|
|fibroblast|0/1|
|gastric|0/16|
|kidney|0/21|
|liver|0/20|
|lung|0/75|
|lymphocyte|0/16|
|ovary|0/26|
|pancreas|0/24|
|peripheral nervous system|0/16|
|plasma cell|0/15|
|prostate|0/1|
|skin|0/24|
|soft tissue|0/9|
|thyroid|0/2|
|upper aerodigestive|0/22|
|urinary tract|0/29|
|uterus|0/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 16788
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 4.61 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='VAMP4 Expression in NALM6 Cells: 4.61'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>