====== 3-Bromopyruvate 7μM R04 exp175 ======
==== Mechanism of Action ====
Inhibits hexokinase II, pyruvate analog, enzyme alkylator, blocks glycolysis
* **Class / Subclass 1:** Metabolism / Metabolic Enzyme Inhibitor
==== Technical Notes ====
* **PubChem Name:** %%Bromopyruvic acid%%
* **Synonyms:** Bromopyruvic acid; Hexokinase II Inhibitor II, 3-BP; Bromopyruvic acid;Hexokinase II Inhibitor II, 3-BP
* **CAS #:** 1113-59-3
* **PubChem CID:** [[https://pubchem.ncbi.nlm.nih.gov/compound/70684|70684]]
* **IUPAC:** %%3-bromo-2-oxopropanoic acid%%
* **INCHI Name:** InChI=1S/C3H3BrO3/c4-1-2(5)3(6)7/h1H2,(H,6,7)
* **INCHI Key:** PRRZDZJYSJLDBS-UHFFFAOYSA-N
* **Molecular Weight:** 166.96
* **Canonical SMILES:** C(C(=O)C(=O)O)Br
* **Isomeric SMILES:** N/A
* **Molecular Formula:** C3H3BrO3
{{:chemogenomics:structures:chem-0109.svg?nolink}}
* **Supplier Name:** Lancaster
* **Catalog #:** L00720
* **Lot #:** 10039674
* **HRMS (ESI-TOF) m/z:** (M-H)- Calcd for C3 H3 Br O3 164.91928; found 164.91875
* **Platform ID:** 3-BrPA
* **Min:** -11.1281; **Max:** 98.9907
{{:chemogenomics:dose_response:dr_177.png?nolink&500 |}}
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^ IC ^ Concentration (µM) ^
| IC10 |N/A |
| IC20 |6.8291 |
| IC30 |7.0416 |
| IC40 |7.2208 |
| IC50 |7.3892 |
| IC60 |N/A |
| IC70 |N/A |
| IC80 |N/A |
| IC90 |N/A |
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==== Screen Summary ====
* **Round**: 04
* **Dose**: 7µM
* **Days of incubation**: 8
* **Doublings**: 3.9
* **Numbers of reads**: 14365188
==== Screen Results ====
^Sensitive/Resistant hits (FDR<0.05)^CRANKS^Score Plot^Top 30 Genes^Screen Similarity^Top 30 Sensitive GO terms^Top 30 Resistant GO terms^
|21/50|[[https://files.tyerslab.com/files/public/chemogenomics/cranks/3-Bromopyruvate_7uM_Round-4_exp175.txt|Scores]]||||||
{{:chemogenomics:cranks_plots:exp175.png?nolink}}
^Gene^CRANKS Score^FDR^
|[[:human_genes:G:GCLM|GCLM]]|-4.10|<0.01|
|[[:human_genes:N:NPRL2|NPRL2]]|-3.99|<0.01|
|[[:human_genes:U:UBE2H|UBE2H]]|-3.60|<0.01|
|[[:human_genes:O:OSGIN2|OSGIN2]]|-3.54|<0.01|
|[[:human_genes:N:NPRL3|NPRL3]]|-3.54|<0.01|
|[[:human_genes:S:SZT2|SZT2]]|-3.53|<0.01|
|[[:human_genes:H:HEXIM1|HEXIM1]]|-3.27|<0.01|
|[[:human_genes:C:CHD1|CHD1]]|-3.22|<0.01|
|[[:human_genes:T:TNFAIP3|TNFAIP3]]|-3.12|<0.01|
|[[:human_genes:W:WDR26|WDR26]]|-3.09|<0.01|
|[[:human_genes:M:MSI2|MSI2]]|-3.05|<0.01|
|[[:human_genes:P:PRKAG1|PRKAG1]]|-2.99|<0.01|
|[[:human_genes:I:INTS12|INTS12]]|-2.90|<0.01|
|[[:human_genes:D:DHX36|DHX36]]|-2.84|<0.01|
|[[:human_genes:G:GID8|GID8]]|-2.76|<0.01|
|[[:human_genes:Y:YPEL5|YPEL5]]|-2.66|<0.01|
|[[:human_genes:M:MSL2|MSL2]]|-2.64|<0.01|
|[[:human_genes:S:SEPHS1|SEPHS1]]|-2.63|<0.01|
|[[:human_genes:D:DEPDC5|DEPDC5]]|-2.60|0.01|
|[[:human_genes:P:PDS5B|PDS5B]]|-2.58|0.01|
|[[:human_genes:G:G3BP1|G3BP1]]|-2.44|0.03|
|[[:human_genes:K:KIAA0391|KIAA0391]]|-2.36|0.07|
|[[:human_genes:D:DDX6|DDX6]]|-2.34|0.10|
|[[:human_genes:R:RBM26|RBM26]]|-2.34|0.10|
|[[:human_genes:C:C12orf66|C12orf66]]|-2.31|0.05|
|[[:human_genes:K:KIAA1210|KIAA1210]]|-2.27|0.06|
|[[:human_genes:T:TRAF2|TRAF2]]|-2.27|0.09|
|[[:human_genes:A:ATG9A|ATG9A]]|-2.26|0.19|
|[[:human_genes:S:STT3A|STT3A]]|-2.26|0.13|
|[[:human_genes:N:NCOR1|NCOR1]]|-2.25|0.07|
|[[:human_genes:T:TBC1D3K|TBC1D3K]]|2.62|0.18|
|[[:human_genes:C:CCDC101|CCDC101]]|2.64|0.01|
|[[:human_genes:C:CCNC|CCNC]]|2.70|<0.01|
|[[:human_genes:S:SP1|SP1]]|2.74|<0.01|
|[[:human_genes:H:HECTD1|HECTD1]]|2.76|<0.01|
|[[:human_genes:C:CDK2|CDK2]]|2.76|<0.01|
|[[:human_genes:W:WDR20|WDR20]]|2.82|<0.01|
|[[:human_genes:N:NRBP1|NRBP1]]|2.85|0.01|
|[[:human_genes:K:KAT2A|KAT2A]]|2.95|<0.01|
|[[:human_genes:M:MED13|MED13]]|2.98|<0.01|
|[[:human_genes:I:ID3|ID3]]|3.00|<0.01|
|[[:human_genes:T:TADA1|TADA1]]|3.05|<0.01|
|[[:human_genes:M:MIOS|MIOS]]|3.12|<0.01|
|[[:human_genes:A:AHCYL1|AHCYL1]]|3.20|<0.01|
|[[:human_genes:M:MED13L|MED13L]]|3.21|<0.01|
|[[:human_genes:S:SLFN11|SLFN11]]|3.25|<0.01|
|[[:human_genes:W:WDR24|WDR24]]|3.26|<0.01|
|[[:human_genes:V:VPS29|VPS29]]|3.28|<0.01|
|[[:human_genes:P:POLR2J|POLR2J]]|3.31|0.04|
|[[:human_genes:T:TADA2B|TADA2B]]|3.32|<0.01|
|[[:human_genes:M:MLST8|MLST8]]|3.36|<0.01|
|[[:human_genes:T:TAF5L|TAF5L]]|3.53|<0.01|
|[[:human_genes:S:SUPT7L|SUPT7L]]|3.56|<0.01|
|[[:human_genes:B:BRPF1|BRPF1]]|3.66|<0.01|
|[[:human_genes:B:BIRC6|BIRC6]]|4.12|<0.01|
|[[:human_genes:S:SLC16A1|SLC16A1]]|4.17|<0.01|
|[[:human_genes:U:UBA6|UBA6]]|5.20|<0.01|
|[[:human_genes:B:BSG|BSG]]|5.40|<0.01|
|[[:human_genes:S:SNX27|SNX27]]|5.52|<0.01|
|[[:human_genes:F:FBXO11|FBXO11]]|5.60|<0.01|
^Screen^Correlation^Plot^
|[[:results:exp106|UM131593 0.2μM R03 exp106]]|0.096||
|[[:results:exp517|Quercetin 20μM R08 exp517]]|0.087||
|[[:results:exp500|LY2090314 0.003μM R08 exp500 no dilution day6]]|0.081||
|[[:results:exp36|TRAIL 50ng/ml R00 exp36]]|0.078||
|[[:results:exp35|TRAIL 5ng/ml R00 exp35]]|0.075||
|[[:results:exp356|Docosahexaenoic-acid 50μM R07 exp356]]|0.072||
|[[:results:exp180|Dynasore 10μM R04 exp180]]|0.071||
|[[:results:exp75|MK-1775 0.32μM R02 exp75]]|0.068||
|[[:results:exp460|BML-284 0.09μM R08 exp460]]|0.064||
|[[:results:exp227|Cryptotanshinone 12μM R05 exp227]]|0.063||
|[[:results:exp499|LY2090314 0.003μM R08 exp499]]|0.058||
|[[:results:exp59|UMK57 1μM R01 exp59]]|0.058||
|[[:results:exp512|Olaparib 4μM R08 exp512]]|0.056||
|[[:results:exp440|Aphidicolin 0.4μM R08 exp440]]|0.054||
|[[:results:exp436|Dynasore 7μM R08 exp436]]|0.054||
|[[:results:exp6|Bortezomib 0.005μM R00 exp6]]|0.053||
|[[:results:exp529|Thimerosal 0.85μM R08 exp529]]|0.052||
|[[:results:exp312|2-Methoxyestradiol 0.55 to 1μM on day4 R07 exp312]]|0.062||
{{:chemogenomics:comparison_plots:exp106_vs_exp175.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp517.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp500.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp36.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp35.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp356.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp180.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp75.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp460.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp227.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp499.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp59.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp512.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp440.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp436.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp6.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp529.png?nolink |}}
{{:chemogenomics:comparison_plots:exp175_vs_exp312.png?nolink |}}
^GO Term^Fold Change^Genes^
|GATOR1 complex|591.93|NPRL2,NPRL3|
|Seh1-associated complex|253.68|NPRL2,NPRL3,DEPDC5|
|negative regulation of TORC1 signaling|57.75|NPRL2,NPRL3,SZT2,DEPDC5|
|cellular response to amino acid starvation|49.33|NPRL2,NPRL3,SZT2,DEPDC5|
|response to amino acid starvation|46.43|NPRL2,NPRL3,SZT2,DEPDC5|
|negative regulation of TOR signaling|35.87|NPRL2,NPRL3,SZT2,DEPDC5|
|regulation of TORC1 signaling|27.53|NPRL2,NPRL3,SZT2,DEPDC5|
^GO Term^Fold Change^Genes^
|GATOR2 complex|276.23|WDR24,MIOS|
|CKM complex|276.23|MED13,CCNC|
|SAGA complex|138.12|SUPT7L,TAF5L,TADA2B,TADA1,KAT2A,SGF29|
|SAGA-type complex|87.23|SUPT7L,TAF5L,TADA2B,TADA1,KAT2A,SGF29|
|histone acetylation|57.15|TAF5L,KAT2A,SGF29|
|internal peptidyl-lysine acetylation|48.75|TAF5L,KAT2A,SGF29|
|histone acetyltransferase complex|42.97|BRPF1,SUPT7L,TAF5L,TADA2B,TADA1,KAT2A,SGF29|
|protein acetyltransferase complex|38.67|BRPF1,SUPT7L,TAF5L,TADA2B,TADA1,KAT2A,SGF29|
|acetyltransferase complex|38.29|BRPF1,SUPT7L,TAF5L,TADA2B,TADA1,KAT2A,SGF29|
|peptidase complex|27.86|SUPT7L,TAF5L,TADA2B,TADA1,KAT2A,SGF29|
|regulation of RNA splicing|18.83|SUPT7L,TAF5L,TADA2B,TADA1,KAT2A,SGF29|
|regulation of DNA repair|16.41|SUPT7L,TAF5L,TADA2B,TADA1,KAT2A,SGF29|
|transferase complex, transferring phosphorus-containing groups|13.71|TAF5L,POLR2J,MED13,KAT2A,CDK2,CCNC,PFKP|
|transcription coactivator activity|12.37|SUPT7L,TAF5L,TADA2B,TADA1,MED13,KAT2A|
|regulation of DNA metabolic process|9.83|SUPT7L,TAF5L,TADA2B,SLFN11,TADA1,ID3,KAT2A,CDK2,SGF29|
|transferase complex|8.67|FBXO11,BRPF1,SUPT7L,TAF5L,TADA2B,POLR2J,TADA1,MED13,KAT2A,CDK2,CCNC,SGF29,PFKP|
|transcription coregulator activity|7.94|SUPT7L,TAF5L,TADA2B,MED13L,TADA1,MED13,KAT2A|
|intracellular protein-containing complex|6.31|FBXO11,BRPF1,SUPT7L,TAF5L,MLST8,TADA2B,POLR2J,TADA1,KAT2A,SGF29|
|post-translational protein modification|5.61|FBXO11,UBA6,BIRC6,TAF5L,WDR24,KAT2A,CDK2,HECTD1,SGF29|