====== Etoposide 0.3μM R05 exp199 ====== ==== Mechanism of Action ==== Binds DNA-TopII complex, blocks re-ligation, induces strand breaks, semi-synthetic derivative of podophyllotoxin * **Class / Subclass 1:** DNA Damage, Repair and Replication / Topoisomerase II Inhibitor ==== Technical Notes ==== * **PubChem Name:** %%Etoposide%% * **Synonyms:** VP-16; VP-16-213 * **CAS #:** 33419-42-0 * **PubChem CID:** [[https://pubchem.ncbi.nlm.nih.gov/compound/36462|36462]] * **IUPAC:** %%(5S,5aR,8aR,9R)-5-[[(2R,4aR,6R,7R,8R,8aS)-7,8-dihydroxy-2-methyl-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxin-6-yl]oxy]-9-(4-hydroxy-3,5-dimethoxyphenyl)-5a,6,8a,9-tetrahydro-5H-[2]benzofuro[6,5-f][1,3]benzodioxol-8-one%% * **INCHI Name:** InChI=1S/C29H32O13/c1-11-36-9-20-27(40-11)24(31)25(32)29(41-20)42-26-14-7-17-16(38-10-39-17)6-13(14)21(22-15(26)8-37-28(22)33)12-4-18(34-2)23(30)19(5-12)35-3/h4-7,11,15,20-22,24-27,29-32H,8-10H2,1-3H3/t11-,15+,20-,21-,22+,24-,25-,26-,27-,29+/m1/s1 * **INCHI Key:** VJJPUSNTGOMMGY-MRVIYFEKSA-N * **Molecular Weight:** 588.6 * **Canonical SMILES:** CC1OCC2C(O1)C(C(C(O2)OC3C4COC(=O)C4C(C5=CC6=C(C=C35)OCO6)C7=CC(=C(C(=C7)OC)O)OC)O)O * **Isomeric SMILES:** C[C@@H]1OC[C@@H]2[C@@H](O1)[C@@H]([C@H]([C@@H](O2)O[C@H]3[C@H]4COC(=O)[C@@H]4[C@@H](C5=CC6=C(C=C35)OCO6)C7=CC(=C(C(=C7)OC)O)OC)O)O * **Molecular Formula:** C29H32O13 {{:chemogenomics:structures:chem-0011.svg?nolink}} * **Supplier Name:** Sigma-Aldrich * **Catalog #:** E1383 * **Lot #:** N/A * **HRMS (ESI-TOF) m/z:** (M+H)+ Calcd for C29H32O13 589.19157; found 589.19262 * **Platform ID:** Etoposide * **Min:** -33.3567; **Max:** 88.0314 {{:chemogenomics:dose_response:dr_265.png?nolink&500 |}} \\ \\ \\ \\ |< 300px 100px 200px >| ^ IC ^ Concentration (µM) ^ | IC10 |N/A | | IC20 |0.1877 | | IC30 |0.2644 | | IC40 |0.3501 | | IC50 |0.4531 | | IC60 |N/A | | IC70 |N/A | | IC80 |N/A | | IC90 |N/A | \\ ==== Screen Summary ==== * **Round**: 05 * **Dose**: 300nM * **Days of incubation**: 8 * **Doublings**: 0.4 * **Numbers of reads**: 19028764 ==== Screen Results ==== ^Sensitive/Resistant hits (FDR<0.05)^CRANKS^Score Plot^Top 30 Genes^Screen Similarity^Top 30 Sensitive GO terms^Top 30 Resistant GO terms^ |0/52|[[https://files.tyerslab.com/files/public/chemogenomics/cranks/Etoposide_0.3uM_Round-5_exp199.txt|Scores]]|||||| {{:chemogenomics:cranks_plots:exp199.png?nolink}} ^Gene^CRANKS Score^FDR^ |[[:human_genes:Z:ZFAND5|ZFAND5]]|-2.64|0.17| |[[:human_genes:P:PSMA3|PSMA3]]|-2.63|0.22| |[[:human_genes:M:MAP3K7|MAP3K7]]|-2.60|0.22| |[[:human_genes:C:CHMP2A|CHMP2A]]|-2.56|0.38| |[[:human_genes:U:UPF2|UPF2]]|-2.55|0.24| |[[:human_genes:A:ATP6V1D|ATP6V1D]]|-2.45|0.22| |[[:human_genes:C:CEP192|CEP192]]|-2.42|0.32| |[[:human_genes:A:ATP6V0B|ATP6V0B]]|-2.42|0.24| |[[:human_genes:S:SMG7|SMG7]]|-2.42|0.24| |[[:human_genes:H:HMG20B|HMG20B]]|-2.40|0.22| |[[:human_genes:C:CHMP4B|CHMP4B]]|-2.39|0.22| |[[:human_genes:Z:ZNF451|ZNF451]]|-2.36|0.22| |[[:human_genes:I:INO80E|INO80E]]|-2.30|0.24| |[[:human_genes:M:MTCH2|MTCH2]]|-2.28|0.24| |[[:human_genes:O:OSBP|OSBP]]|-2.28|0.24| |[[:human_genes:C:CNOT2|CNOT2]]|-2.26|0.22| |[[:human_genes:P:PAN2|PAN2]]|-2.24|0.22| |[[:human_genes:C:CHMP6|CHMP6]]|-2.23|0.24| |[[:human_genes:P:PSMC6|PSMC6]]|-2.17|0.59| |[[:human_genes:M:MCM7|MCM7]]|-2.16|0.38| |[[:human_genes:P:POLR1A|POLR1A]]|-2.16|0.48| |[[:human_genes:S:SUPT6H|SUPT6H]]|-2.14|0.42| |[[:human_genes:M:MR1|MR1]]|-2.12|0.24| |[[:human_genes:P:PSMB4|PSMB4]]|-2.12|0.32| |[[:human_genes:B:BRAP|BRAP]]|-2.11|0.32| |[[:human_genes:W:WDR53|WDR53]]|-2.11|0.32| |[[:human_genes:F:FAM72C|FAM72C]]|-2.11|0.68| |[[:human_genes:C:CDT1|CDT1]]|-2.10|0.61| |[[:human_genes:F:FAM21A|FAM21A]]|-2.10|0.24| |[[:human_genes:S:SRGAP2C|SRGAP2C]]|-2.09|0.68| |[[:human_genes:A:ABCF1|ABCF1]]|2.68|0.01| |[[:human_genes:B:BTF3|BTF3]]|2.68|0.01| |[[:human_genes:P:PHB|PHB]]|2.70|0.18| |[[:human_genes:T:TP53|TP53]]|2.71|0.01| |[[:human_genes:W:WDR24|WDR24]]|2.74|<0.01| |[[:human_genes:E:EIF4G1|EIF4G1]]|2.78|<0.01| |[[:human_genes:W:WDR59|WDR59]]|2.83|<0.01| |[[:human_genes:S:SERF2|SERF2]]|2.86|<0.01| |[[:human_genes:D:DIABLO|DIABLO]]|2.90|<0.01| |[[:human_genes:E:ENY2|ENY2]]|3.05|<0.01| |[[:human_genes:C:CASP9|CASP9]]|3.09|<0.01| |[[:human_genes:R:RBM26|RBM26]]|3.10|<0.01| |[[:human_genes:P:PELO|PELO]]|3.10|<0.01| |[[:human_genes:W:WDR82|WDR82]]|3.14|<0.01| |[[:human_genes:V:VHL|VHL]]|3.21|<0.01| |[[:human_genes:H:HCCS|HCCS]]|3.49|<0.01| |[[:human_genes:E:EIF4A1|EIF4A1]]|3.63|<0.01| |[[:human_genes:M:MED16|MED16]]|3.66|<0.01| |[[:human_genes:R:RPTOR|RPTOR]]|3.68|<0.01| |[[:human_genes:C:CYCS|CYCS]]|3.88|<0.01| |[[:human_genes:M:MARCH5|MARCH5]]|3.88|<0.01| |[[:human_genes:C:COPS7B|COPS7B]]|4.03|<0.01| |[[:human_genes:F:FAF2|FAF2]]|4.07|<0.01| |[[:human_genes:N:NAA15|NAA15]]|4.10|<0.01| |[[:human_genes:U:UBQLN1|UBQLN1]]|4.33|<0.01| |[[:human_genes:V:VDAC2|VDAC2]]|4.83|<0.01| |[[:human_genes:B:BAK1|BAK1]]|5.42|<0.01| |[[:human_genes:A:APAF1|APAF1]]|5.85|<0.01| |[[:human_genes:P:PLAA|PLAA]]|6.92|<0.01| |[[:human_genes:T:TOP2A|TOP2A]]|8.37|<0.01| ^Screen^Correlation^Plot^ |[[:results:exp19|Etoposide 1μM R00 exp19]]|0.177|| |[[:results:exp503|Mitomycin-C 0.06μM R08 exp503]]|0.127|| |[[:results:exp28|Pimelic-diphenylamide-106 5μM R00 exp28]]|0.126|| |[[:results:exp135|MS023 7μM R03 exp135]]|0.122|| |[[:results:exp34|Rotenone 20μM R00 exp34]]|0.116|| |[[:results:exp531|THZ1 0.06μM R08 exp531]]|0.103|| |[[:results:exp80|RO-3307 4.7μM R02 exp80]]|0.099|| |[[:results:exp443|SNS-032 15μM R08 exp443]]|0.092|| |[[:results:exp515|PU-H71 1μM R08 exp515]]|0.089|| |[[:results:exp524|Staurosporine 0.02μM R08 exp524]]|0.088|| |[[:results:exp527|Tanespimycin 14μM R08 exp527]]|0.086|| |[[:results:exp240|Pyridostatin 4μM R05 exp240]]|0.081|| |[[:results:exp485|GSK626616 14μM R08 exp485]]|0.079|| |[[:results:exp512|Olaparib 4μM R08 exp512]]|0.075|| |[[:results:exp488|Hippuristanol 0.12μM R08 exp488]]|0.074|| |[[:results:exp489|Hippuristanol 0.12μM R08 exp489 no dilution day6]]|0.072|| |[[:results:exp22|MLN-4924 2μM R00 exp22]]|0.07|| |[[:results:exp106|UM131593 0.2μM R03 exp106]]|0.068|| |[[:results:exp85|UM0129480 7μM R02 exp85]]|0.068|| |[[:results:exp441|GSK-J4 1.5μM R08 exp441]]|0.067|| |[[:results:exp108|Vinblastine 0.2μM R03 exp108]]|0.065|| |[[:results:exp414|Tozasertib 0.1μM R07 exp414]]|0.055|| |[[:results:exp21|MLN-4924 0.2μM R00 exp21]]|0.055|| |[[:results:exp374|Latrunculin-B 10μM R07 exp374]]|0.054|| |[[:results:exp435|JQ1 0.8μM R08 exp435]]|0.052|| |[[:results:exp126|GSK461364A 0.1μM R03 exp126]]|0.052|| |[[:results:exp26|Oligomycin-A 20μM R00 exp26]]|0.052|| |[[:results:exp134|MS023 2μM R03 exp134]]|0.051|| |[[:results:exp478|Doxorubicin 0.02μM R08 exp478]]|0.198|| |[[:results:exp2|5-Fluorouracil 20μM R00 exp2]]|0.164|| |[[:results:exp456|Benzoate 20000μM R08 exp456]]|0.162|| |[[:results:exp459|Bleomycin 5μM R08 exp459]]|0.15|| |[[:results:exp3|Actinomycin-D 0.001μM R00 exp3]]|0.148|| |[[:results:exp259|6-Thio-2-deoxyguanosine 2μM R06 exp259]]|0.109|| |[[:results:exp451|Atovaquone 15μM R08 exp451]]|0.101|| |[[:results:exp211|AICAR 240μM R05 exp211]]|0.101|| |[[:results:exp472|CI-1040 9.5μM R08 exp472]]|0.096|| |[[:results:exp440|Aphidicolin 0.4μM R08 exp440]]|0.085|| |[[:results:exp355|Dinaciclib 0.007μM R07 exp355]]|0.077|| |[[:results:exp357|Dorsomorphin 5μM R07 exp357]]|0.072|| |[[:results:exp350|Deferoxamine 11μM R07 exp350]]|0.068|| |[[:results:exp474|CR131-b 0.005μM R08 exp474]]|0.068|| |[[:results:exp96|BI-2536 0.02μM R03 exp96]]|0.066|| |[[:results:exp448|Ammonium tetrathiomolybdate 10μM R08 exp448]]|0.063|| |[[:results:exp98|BI-6727 0.04μM R03 exp98]]|0.061|| |[[:results:exp116|AICAR 240μM R03 exp116]]|0.061|| |[[:results:exp7|Bortezomib 0.05μM R00 exp7]]|0.058|| |[[:results:exp450|Artemisinin 50μM R08 exp450]]|0.056|| |[[:results:exp539|42°C R08 exp539]]|0.055|| |[[:results:exp468|CB-5083 0.4μM R08 exp468]]|0.055|| |[[:results:exp17|DABN 20μM R00 exp17]]|0.054|| |[[:results:exp343|Centrinone 0.5μM R07 exp343]]|0.052|| {{:chemogenomics:comparison_plots:exp19_vs_exp199.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp503.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp28.png?nolink |}} {{:chemogenomics:comparison_plots:exp135_vs_exp199.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp34.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp531.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp80.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp443.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp515.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp524.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp527.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp240.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp485.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp512.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp488.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp489.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp22.png?nolink |}} {{:chemogenomics:comparison_plots:exp106_vs_exp199.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp85.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp441.png?nolink |}} {{:chemogenomics:comparison_plots:exp108_vs_exp199.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp414.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp21.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp374.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp435.png?nolink |}} {{:chemogenomics:comparison_plots:exp126_vs_exp199.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp26.png?nolink |}} {{:chemogenomics:comparison_plots:exp134_vs_exp199.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp478.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp2.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp456.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp459.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp3.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp259.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp451.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp211.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp472.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp355.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp357.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp350.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp474.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp96.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp448.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp98.png?nolink |}} {{:chemogenomics:comparison_plots:exp116_vs_exp199.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp7.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp450.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp539.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp17_vs_exp199.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp343.png?nolink |}} ^GO Term^Fold Change^Genes^ |ESCRT III complex|204.57|CHMP2A,CHMP4B,CHMP6| |vesicle fusion with vacuole|184.11|CHMP2A,CHMP4B,CHMP6| |multivesicular body-lysosome fusion|184.11|CHMP2A,CHMP4B,CHMP6| |vacuole fusion|167.37|CHMP2A,CHMP4B,CHMP6| |amphisome|153.43|CHMP2A,CHMP4B,CHMP6| |viral budding from plasma membrane|153.43|CHMP2A,CHMP4B,CHMP6| |non-lytic viral release|141.62|CHMP2A,CHMP4B,CHMP6| |midbody abscission|115.07|CHMP2A,CHMP4B,CHMP6| |endosome to lysosome transport via multivesicular body sorting pathway|115.07|CHMP2A,CHMP4B,CHMP6| |late endosome to lysosome transport|108.30|CHMP2A,CHMP4B,CHMP6| |regulation of mitotic spindle assembly|87.67|CHMP2A,CHMP4B,CHMP6| |mitotic metaphase chromosome alignment|48.13|CHMP2A,CHMP4B,CHMP6,CDT1| |endosome organization|34.87|CHMP2A,ATP6V1D,ATP6V0B,CHMP4B,CHMP6| |lytic vacuole organization|31.96|CHMP2A,ATP6V1D,ATP6V0B,CHMP4B,CHMP6| |lysosome organization|31.96|CHMP2A,ATP6V1D,ATP6V0B,CHMP4B,CHMP6| |mitotic sister chromatid segregation|22.56|CHMP2A,CEP192,CHMP4B,CHMP6,CDT1| |sister chromatid segregation|21.92|CHMP2A,CEP192,CHMP4B,CHMP6,CDT1| |endosome membrane|9.03|MAP3K7,CHMP2A,ATP6V1D,ATP6V0B,CHMP4B,CHMP6,MR1,WASHC2A| |macromolecule catabolic process|6.67|PSMA3,CHMP2A,UPF2,SMG7,CHMP4B,CNOT2,PAN2,CHMP6,PSMC6,PSMB4| ^GO Term^Fold Change^Genes^ |apoptosome|552.33|APAF1,CASP9| |activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c|441.87|APAF1,CYCS,CASP9,DIABLO| |glial cell apoptotic process|276.17|CASP9,TP53| |GATOR2 complex|276.17|WDR59,WDR24| |positive regulation of mitochondrial membrane permeability|59.18|BAK1,VDAC2,TP53| |positive regulation of membrane permeability|53.45|BAK1,VDAC2,TP53| |negative regulation of autophagy|25.11|RPTOR,VHL,EIF4G1,TP53| |positive regulation of cysteine-type endopeptidase activity|22.27|APAF1,BAK1,CYCS,CASP9,DIABLO| |intrinsic apoptotic signaling pathway|20.71|APAF1,BAK1,CYCS,CASP9,DIABLO,TP53| |positive regulation of endopeptidase activity|19.05|APAF1,BAK1,CYCS,CASP9,DIABLO| |positive regulation of peptidase activity|17.37|APAF1,BAK1,CYCS,CASP9,DIABLO| |response to endoplasmic reticulum stress|14.93|APAF1,BAK1,UBQLN1,FAF2,EIF4G1,TP53| |regulation of cysteine-type endopeptidase activity|14.69|APAF1,BAK1,CYCS,CASP9,DIABLO| |apoptotic signaling pathway|12.55|APAF1,BAK1,VDAC2,CYCS,CASP9,DIABLO,TP53| |response to hypoxia|12.37|APAF1,UBQLN1,RPTOR,VHL,CASP9,TP53| |response to decreased oxygen levels|11.63|APAF1,UBQLN1,RPTOR,VHL,CASP9,TP53| |response to oxygen levels|10.66|APAF1,UBQLN1,RPTOR,VHL,CASP9,TP53| |cellular response to external stimulus|10.20|BAK1,RPTOR,WDR59,EIF4G1,WDR24,TP53| |positive regulation of proteolysis|9.83|APAF1,BAK1,UBQLN1,CYCS,CASP9,DIABLO|