====== MLN-4924 2μM R00 exp22 ======
==== Mechanism of Action ====
Inhibits NEDD8-activating enzyme (NAE), prevents activity of cullin-RING ligase (CRL) E3 enzymes
* **Class / Subclass 1:** Proteostasis / NEDDylation Inhibitor
==== Technical Notes ====
* **PubChem Name:** %%Pevonedistat%%
* **Synonyms:** MLN4924
* **CAS #:** 905579-51-3
* **PubChem CID:** [[https://pubchem.ncbi.nlm.nih.gov/compound/16720766|16720766]]
* **IUPAC:** %%[(1S,2S,4R)-4-[4-[[(1S)-2,3-dihydro-1H-inden-1-yl]amino]pyrrolo[2,3-d]pyrimidin-7-yl]-2-hydroxycyclopentyl]methyl sulfamate%%
* **INCHI Name:** InChI=1S/C21H25N5O4S/c22-31(28,29)30-11-14-9-15(10-19(14)27)26-8-7-17-20(23-12-24-21(17)26)25-18-6-5-13-3-1-2-4-16(13)18/h1-4,7-8,12,14-15,18-19,27H,5-6,9-11H2,(H2,22,28,29)(H,23,24,25)/t14-,15+,18-,19-/m0/s1
* **INCHI Key:** MPUQHZXIXSTTDU-QXGSTGNESA-N
* **Molecular Weight:** 443.5
* **Canonical SMILES:** C1CC2=CC=CC=C2C1NC3=C4C=CN(C4=NC=N3)C5CC(C(C5)O)COS(=O)(=O)N
* **Isomeric SMILES:** C1CC2=CC=CC=C2[C@H]1NC3=C4C=CN(C4=NC=N3)[C@@H]5C[C@H]([C@H](C5)O)COS(=O)(=O)N
* **Molecular Formula:** C21H25N5O4S
{{:chemogenomics:structures:chem-0012.svg?nolink}}
* **Supplier Name:** N/A
* **Catalog #:** N/A
* **Lot #:** N/A
Characterization data not available.
* **Platform ID:** MLN-4924
* **Min:** 0.2392; **Max:** 97.5121
{{:chemogenomics:dose_response:dr_269.png?nolink&500 |}}
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^ IC ^ Concentration (µM) ^
| IC10 |N/A |
| IC20 |0.0970 |
| IC30 |0.1416 |
| IC40 |0.1931 |
| IC50 |0.2566 |
| IC60 |N/A |
| IC70 |N/A |
| IC80 |N/A |
| IC90 |N/A |
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==== Screen Summary ====
* **Round**: 00
* **Dose**: 2µM
* **Days of incubation**: 8
* **Doublings**: 0.6
* **Numbers of reads**: 12173332
==== Screen Results ====
^Sensitive/Resistant hits (FDR<0.05)^CRANKS^Score Plot^Top 30 Genes^Screen Similarity^Top 30 Sensitive GO terms^Top 30 Resistant GO terms^
|1/34|[[https://files.tyerslab.com/files/public/chemogenomics/cranks/MLN-4924_2uM_Round-0_exp22.txt|Scores]]||||||
{{:chemogenomics:cranks_plots:exp22.png?nolink}}
^Gene^CRANKS Score^FDR^
|[[:human_genes:C:COPB2|COPB2]]|-3.16|0.08|
|[[:human_genes:S:SLFN11|SLFN11]]|-2.91|0.03|
|[[:human_genes:A:AURKB|AURKB]]|-2.83|0.15|
|[[:human_genes:I:INCENP|INCENP]]|-2.75|0.08|
|[[:human_genes:P:PSMA7|PSMA7]]|-2.64|0.33|
|[[:human_genes:P:PSMB2|PSMB2]]|-2.64|0.21|
|[[:human_genes:P:PRIM1|PRIM1]]|-2.56|0.44|
|[[:human_genes:C:COX7A2L|COX7A2L]]|-2.54|0.08|
|[[:human_genes:P:POLE|POLE]]|-2.53|0.36|
|[[:human_genes:S:SPG7|SPG7]]|-2.53|0.12|
|[[:human_genes:K:KRI1|KRI1]]|-2.51|0.36|
|[[:human_genes:C:CNOT3|CNOT3]]|-2.50|0.12|
|[[:human_genes:D:DDX3X|DDX3X]]|-2.49|0.08|
|[[:human_genes:V:VPS52|VPS52]]|-2.45|0.12|
|[[:human_genes:A:AATF|AATF]]|-2.44|0.21|
|[[:human_genes:C:CXXC1|CXXC1]]|-2.40|0.10|
|[[:human_genes:C:CNOT2|CNOT2]]|-2.40|0.10|
|[[:human_genes:A:ATP6V1B2|ATP6V1B2]]|-2.40|0.12|
|[[:human_genes:P:POLR2L|POLR2L]]|-2.34|0.44|
|[[:human_genes:P:PSMD2|PSMD2]]|-2.31|0.19|
|[[:human_genes:S:SART1|SART1]]|-2.30|0.44|
|[[:human_genes:H:HEXIM1|HEXIM1]]|-2.28|0.12|
|[[:human_genes:N:NME6|NME6]]|-2.27|0.12|
|[[:human_genes:W:WAPAL|WAPAL]]|-2.26|0.15|
|[[:human_genes:A:ADIPOR2|ADIPOR2]]|-2.25|0.12|
|[[:human_genes:P:POLR2I|POLR2I]]|-2.23|0.12|
|[[:human_genes:S:SYS1|SYS1]]|-2.22|0.12|
|[[:human_genes:E:EXOSC1|EXOSC1]]|-2.22|0.12|
|[[:human_genes:K:KRT6B|KRT6B]]|-2.22|0.12|
|[[:human_genes:P:POLR2D|POLR2D]]|-2.20|0.19|
|[[:human_genes:T:TXNDC17|TXNDC17]]|2.34|0.04|
|[[:human_genes:M:MTOR|MTOR]]|2.36|0.09|
|[[:human_genes:T:TBP|TBP]]|2.40|0.05|
|[[:human_genes:P:POLR3H|POLR3H]]|2.43|0.02|
|[[:human_genes:P:POLR3B|POLR3B]]|2.45|0.04|
|[[:human_genes:E:EZH2|EZH2]]|2.46|0.07|
|[[:human_genes:N:NXT1|NXT1]]|2.53|0.01|
|[[:human_genes:C:CMTR2|CMTR2]]|2.55|0.01|
|[[:human_genes:K:KCMF1|KCMF1]]|2.56|0.01|
|[[:human_genes:T:TTI2|TTI2]]|2.63|0.04|
|[[:human_genes:P:PYROXD1|PYROXD1]]|2.69|0.06|
|[[:human_genes:M:MEAF6|MEAF6]]|2.71|0.01|
|[[:human_genes:R:RPE|RPE]]|2.72|0.01|
|[[:human_genes:T:TTI1|TTI1]]|2.77|<0.01|
|[[:human_genes:G:GTF3C3|GTF3C3]]|2.85|<0.01|
|[[:human_genes:R:RPTOR|RPTOR]]|2.93|<0.01|
|[[:human_genes:G:GTF3A|GTF3A]]|3.02|<0.01|
|[[:human_genes:C:CD9|CD9]]|3.03|<0.01|
|[[:human_genes:T:TAZ|TAZ]]|3.04|<0.01|
|[[:human_genes:O:OTUD5|OTUD5]]|3.11|<0.01|
|[[:human_genes:E:ENY2|ENY2]]|3.11|<0.01|
|[[:human_genes:P:PAX5|PAX5]]|3.15|<0.01|
|[[:human_genes:P:PLAA|PLAA]]|3.17|<0.01|
|[[:human_genes:R:RTCB|RTCB]]|3.24|<0.01|
|[[:human_genes:A:APAF1|APAF1]]|3.33|<0.01|
|[[:human_genes:P:PTRH2|PTRH2]]|3.40|<0.01|
|[[:human_genes:C:CDKN1A|CDKN1A]]|3.42|<0.01|
|[[:human_genes:B:BAK1|BAK1]]|3.46|<0.01|
|[[:human_genes:G:GMPPB|GMPPB]]|3.67|<0.01|
|[[:human_genes:T:TP53|TP53]]|5.93|<0.01|
^Screen^Correlation^Plot^
|[[:results:exp28|Pimelic-diphenylamide-106 5μM R00 exp28]]|0.126||
|[[:results:exp531|THZ1 0.06μM R08 exp531]]|0.096||
|[[:results:exp34|Rotenone 20μM R00 exp34]]|0.087||
|[[:results:exp443|SNS-032 15μM R08 exp443]]|0.065||
|[[:results:exp515|PU-H71 1μM R08 exp515]]|0.063||
|[[:results:exp503|Mitomycin-C 0.06μM R08 exp503]]|0.061||
|[[:results:exp108|Vinblastine 0.2μM R03 exp108]]|0.054||
|[[:results:exp106|UM131593 0.2μM R03 exp106]]|0.051||
|[[:results:exp80|RO-3307 4.7μM R02 exp80]]|0.051||
|[[:results:exp3|Actinomycin-D 0.001μM R00 exp3]]|0.119||
|[[:results:exp2|5-Fluorouracil 20μM R00 exp2]]|0.111||
|[[:results:exp19|Etoposide 1μM R00 exp19]]|0.109||
|[[:results:exp126|GSK461364A 0.1μM R03 exp126]]|0.096||
|[[:results:exp7|Bortezomib 0.05μM R00 exp7]]|0.092||
|[[:results:exp17|DABN 20μM R00 exp17]]|0.083||
|[[:results:exp456|Benzoate 20000μM R08 exp456]]|0.083||
|[[:results:exp472|CI-1040 9.5μM R08 exp472]]|0.08||
|[[:results:exp4|Actinomycin-D 0.01μM R00 exp4]]|0.074||
|[[:results:exp478|Doxorubicin 0.02μM R08 exp478]]|0.074||
|[[:results:exp199|Etoposide 0.3μM R05 exp199]]|0.07||
|[[:results:exp459|Bleomycin 5μM R08 exp459]]|0.068||
|[[:results:exp98|BI-6727 0.04μM R03 exp98]]|0.068||
|[[:results:exp96|BI-2536 0.02μM R03 exp96]]|0.066||
|[[:results:exp539|42°C R08 exp539]]|0.062||
|[[:results:exp451|Atovaquone 15μM R08 exp451]]|0.056||
|[[:results:exp448|Ammonium tetrathiomolybdate 10μM R08 exp448]]|0.054||
{{:chemogenomics:comparison_plots:exp22_vs_exp28.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp531.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp34.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp443.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp515.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp503.png?nolink |}}
{{:chemogenomics:comparison_plots:exp108_vs_exp22.png?nolink |}}
{{:chemogenomics:comparison_plots:exp106_vs_exp22.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp80.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp3.png?nolink |}}
{{:chemogenomics:comparison_plots:exp2_vs_exp22.png?nolink |}}
{{:chemogenomics:comparison_plots:exp19_vs_exp22.png?nolink |}}
{{:chemogenomics:comparison_plots:exp126_vs_exp22.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp7.png?nolink |}}
{{:chemogenomics:comparison_plots:exp17_vs_exp22.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp456.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp472.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp4.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp478.png?nolink |}}
{{:chemogenomics:comparison_plots:exp199_vs_exp22.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp459.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp98.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp96.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp539.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp451.png?nolink |}}
{{:chemogenomics:comparison_plots:exp22_vs_exp448.png?nolink |}}
^GO Term^Fold Change^Genes^
|catalytic activity, acting on a nucleic acid|8.61|SLFN11,PRIM1,POLE,DDX3X,CNOT2,POLR2L,WAPL,POLR2I,EXOSC1|
^GO Term^Fold Change^Genes^
|RNA polymerase III type 2 promoter sequence-specific DNA binding|368.47|RPTOR,MTOR|
|RNA polymerase III general transcription initiation factor binding|368.47|RPTOR,MTOR|
|5S rDNA binding|368.47|RPTOR,MTOR|
|regulation of pentose-phosphate shunt|276.35|TP53,RPTOR,MTOR|
|positive regulation of DNA damage checkpoint|276.35|TTI1,TTI2|
|regulation of NADP metabolic process|236.87|TP53,RPTOR,MTOR|
|TOR complex|165.81|RPTOR,TTI1,MTOR|
|rRNA transcription|75.37|TP53,GTF3A,GTF3C3|
|transcription by RNA polymerase III|72.72|GTF3A,GTF3C3,POLR3B,POLR3H,TBP|
|general transcription initiation factor binding|41.71|TP53,RPTOR,TBP,MTOR|
|cellular response to starvation|16.26|TP53,CDKN1A,RPTOR,MTOR,PIK3R4|
|transferase complex, transferring phosphorus-containing groups|11.72|CDKN1A,ENY2,POLR3B,POLR3H,TBP,PIK3R4|
|cellular response to external stimulus|10.17|TP53,BAK1,CDKN1A,RPTOR,MTOR,PIK3R4|
|DNA-templated transcription|9.29|TP53,PAX5,ENY2,GTF3A,GTF3C3,POLR3B,POLR3H,TBP|
|RNA biosynthetic process|9.06|TP53,PAX5,ENY2,GTF3A,GTF3C3,POLR3B,POLR3H,TBP|
|heterocycle biosynthetic process|6.09|TP53,GMPPB,PAX5,ENY2,GTF3A,GTF3C3,POLR3B,POLR3H,TBP,MTOR|
|nucleobase-containing compound biosynthetic process|5.98|TP53,GMPPB,PAX5,ENY2,GTF3A,GTF3C3,POLR3B,POLR3H,TBP|
|intracellular protein-containing complex|5.68|RTCB,ENY2,RPTOR,TTI1,MEAF6,POLR3B,POLR3H,TBP,MTOR|
|aromatic compound biosynthetic process|5.44|TP53,GMPPB,PAX5,ENY2,GTF3A,GTF3C3,POLR3B,POLR3H,TBP|