====== Aphidicolin 0.4μM R08 exp440 ====== ==== Mechanism of Action ==== Inhibits DNA polymerases Polα, Polδ, Polϵ and Polζ * **Class / Subclass 1:** DNA Damage, Repair and Replication / Replication Inhibitor * **Class / Subclass 2:** Cell Cycle / Replication Inhibitor * **Class / Subclass 3:** Infectious Disease / Antiviral ==== Technical Notes ==== * **PubChem Name:** %%Aphidicolin%% * **Synonyms:** N/A * **CAS #:** 38966-21-1 * **PubChem CID:** [[https://pubchem.ncbi.nlm.nih.gov/compound/457964|457964]] * **IUPAC:** %%(1S,2S,5R,6R,7R,10S,12R,13R)-6,13-bis(hydroxymethyl)-2,6-dimethyltetracyclo[10.3.1.01,10.02,7]hexadecane-5,13-diol%% * **INCHI Name:** InChI=1S/C20H34O4/c1-17(11-21)15-4-3-13-9-14-10-19(13,7-8-20(14,24)12-22)18(15,2)6-5-16(17)23/h13-16,21-24H,3-12H2,1-2H3/t13-,14+,15-,16+,17-,18-,19-,20-/m0/s1 * **INCHI Key:** NOFOAYPPHIUXJR-APNQCZIXSA-N * **Molecular Weight:** 338.5 * **Canonical SMILES:** CC12CCC(C(C1CCC3C24CCC(C(C3)C4)(CO)O)(C)CO)O * **Isomeric SMILES:** C[C@]12CC[C@H]([C@@]([C@@H]1CC[C@@H]3[C@@]24CC[C@@]([C@H](C3)C4)(CO)O)(C)CO)O * **Molecular Formula:** C20H34O4 {{:chemogenomics:structures:chem-0157.svg?nolink}} * **Supplier Name:** Toronto Research Chemicals * **Catalog #:** A726260 * **Lot #:** 1-TSS-153-1 * **HRMS (ESI-TOF) m/z:** (M+Na)+ Calcd for C20H34O4 361.23493; found 361.23594 * **Platform ID:** Aphidicolin_A * **Min:** -33.0803; **Max:** 90.7760 {{:chemogenomics:dose_response:dr_498.png?nolink&500 |}} \\ \\ \\ \\ |< 300px 100px 200px >| ^ IC ^ Concentration (µM) ^ | IC10 |0.2361 | | IC20 |0.3133 | | IC30 |0.3781 | | IC40 |0.4411 | | IC50 |0.5081 | | IC60 |0.5853 | | IC70 |0.6828 | | IC80 |0.8240 | | IC90 |1.0930 | \\ ==== Screen Summary ==== * **Round**: 08 * **Dose**: 400nM * **Days of incubation**: 8 * **Doublings**: 0.9 * **Numbers of reads**: 16794216 ==== Screen Results ==== ^Sensitive/Resistant hits (FDR<0.05)^CRANKS^Score Plot^Top 30 Genes^Screen Similarity^Top 30 Sensitive GO terms^Top 30 Resistant GO terms^ |26/94|[[https://files.tyerslab.com/files/public/chemogenomics/cranks/Aphidicolin_0.4uM_Round-8_exp440.txt|Scores]]|||||| {{:chemogenomics:cranks_plots:exp440.png?nolink}} ^Gene^CRANKS Score^FDR^ |[[:human_genes:G:GTPBP2|GTPBP2]]|-4.72|<0.01| |[[:human_genes:O:OTUB1|OTUB1]]|-3.78|<0.01| |[[:human_genes:D:DERA|DERA]]|-3.72|<0.01| |[[:human_genes:K:KPNA4|KPNA4]]|-3.37|<0.01| |[[:human_genes:M:MSI2|MSI2]]|-3.23|<0.01| |[[:human_genes:A:ANKRD32|ANKRD32]]|-3.11|<0.01| |[[:human_genes:R:RECQL5|RECQL5]]|-3.00|<0.01| |[[:human_genes:D:DCK|DCK]]|-2.91|<0.01| |[[:human_genes:R:RING1|RING1]]|-2.74|0.02| |[[:human_genes:T:TMOD4|TMOD4]]|-2.72|0.02| |[[:human_genes:A:ALDH16A1|ALDH16A1]]|-2.71|0.01| |[[:human_genes:U:UBE2N|UBE2N]]|-2.63|0.02| |[[:human_genes:S:SPEN|SPEN]]|-2.61|0.02| |[[:human_genes:U:UXS1|UXS1]]|-2.58|0.02| |[[:human_genes:V:VPS25|VPS25]]|-2.53|0.27| |[[:human_genes:G:GIGYF2|GIGYF2]]|-2.52|0.04| |[[:human_genes:S:SMG7|SMG7]]|-2.52|0.04| |[[:human_genes:I:INTS12|INTS12]]|-2.51|0.02| |[[:human_genes:P:PDS5B|PDS5B]]|-2.49|0.02| |[[:human_genes:P:PCGF1|PCGF1]]|-2.48|0.02| |[[:human_genes:T:TRAF2|TRAF2]]|-2.47|0.04| |[[:human_genes:P:PSME3|PSME3]]|-2.47|0.02| |[[:human_genes:S:SMARCAL1|SMARCAL1]]|-2.44|0.03| |[[:human_genes:T:TRMT44|TRMT44]]|-2.44|0.03| |[[:human_genes:C:CSE1L|CSE1L]]|-2.42|0.14| |[[:human_genes:P:PPIL1|PPIL1]]|-2.41|0.06| |[[:human_genes:U:UBE2D2|UBE2D2]]|-2.41|0.03| |[[:human_genes:P:PSMB1|PSMB1]]|-2.36|0.10| |[[:human_genes:U:UBE2E1|UBE2E1]]|-2.33|0.04| |[[:human_genes:O:OR51S1|OR51S1]]|-2.33|0.04| |[[:human_genes:Z:ZNF330|ZNF330]]|2.83|<0.01| |[[:human_genes:C:CYCS|CYCS]]|2.83|<0.01| |[[:human_genes:S:SLC39A10|SLC39A10]]|2.88|<0.01| |[[:human_genes:K:KLF16|KLF16]]|2.92|<0.01| |[[:human_genes:C:CD19|CD19]]|2.94|<0.01| |[[:human_genes:N:NSD1|NSD1]]|2.97|<0.01| |[[:human_genes:T:TP53|TP53]]|2.99|<0.01| |[[:human_genes:A:ATP2A2|ATP2A2]]|3.00|0.12| |[[:human_genes:I:IRF1|IRF1]]|3.02|0.00| |[[:human_genes:R:RAD23B|RAD23B]]|3.06|<0.01| |[[:human_genes:T:TRMT61A|TRMT61A]]|3.18|<0.01| |[[:human_genes:R:RICTOR|RICTOR]]|3.23|0.00| |[[:human_genes:A:APAF1|APAF1]]|3.25|0.00| |[[:human_genes:R:RMI2|RMI2]]|3.27|0.00| |[[:human_genes:D:DOHH|DOHH]]|3.34|0.00| |[[:human_genes:K:KCTD5|KCTD5]]|3.36|0.00| |[[:human_genes:C:CD81|CD81]]|3.36|0.00| |[[:human_genes:M:MARCH5|MARCH5]]|3.39|0.00| |[[:human_genes:A:AHCYL1|AHCYL1]]|3.44|0.00| |[[:human_genes:M:MLST8|MLST8]]|3.57|0.00| |[[:human_genes:H:HCCS|HCCS]]|3.61|0.00| |[[:human_genes:C:CASP9|CASP9]]|3.68|0.00| |[[:human_genes:Y:YARS2|YARS2]]|3.68|0.00| |[[:human_genes:V:VDAC2|VDAC2]]|3.76|0.00| |[[:human_genes:S:SLFN11|SLFN11]]|3.93|0.00| |[[:human_genes:P:PLAA|PLAA]]|4.10|0.00| |[[:human_genes:P:PIK3CD|PIK3CD]]|4.25|0.00| |[[:human_genes:M:MAPKAP1|MAPKAP1]]|4.59|0.00| |[[:human_genes:B:BAK1|BAK1]]|5.73|0.00| |[[:human_genes:F:FBXO11|FBXO11]]|5.93|0.00| ^Screen^Correlation^Plot^ |[[:results:exp512|Olaparib 4μM R08 exp512]]|0.16|| |[[:results:exp456|Benzoate 20000μM R08 exp456]]|0.152|| |[[:results:exp488|Hippuristanol 0.12μM R08 exp488]]|0.146|| |[[:results:exp503|Mitomycin-C 0.06μM R08 exp503]]|0.14|| |[[:results:exp489|Hippuristanol 0.12μM R08 exp489 no dilution day6]]|0.138|| |[[:results:exp329|Hydroxyurea 100μM R07 exp329]]|0.134|| |[[:results:exp451|Atovaquone 15μM R08 exp451]]|0.13|| |[[:results:exp472|CI-1040 9.5μM R08 exp472]]|0.126|| |[[:results:exp435|JQ1 0.8μM R08 exp435]]|0.122|| |[[:results:exp529|Thimerosal 0.85μM R08 exp529]]|0.112|| |[[:results:exp478|Doxorubicin 0.02μM R08 exp478]]|0.109|| |[[:results:exp135|MS023 7μM R03 exp135]]|0.103|| |[[:results:exp535|Trimetrexate 0.03μM R08 exp535]]|0.103|| |[[:results:exp524|Staurosporine 0.02μM R08 exp524]]|0.1|| |[[:results:exp459|Bleomycin 5μM R08 exp459]]|0.1|| |[[:results:exp515|PU-H71 1μM R08 exp515]]|0.1|| |[[:results:exp134|MS023 2μM R03 exp134]]|0.099|| |[[:results:exp441|GSK-J4 1.5μM R08 exp441]]|0.098|| |[[:results:exp527|Tanespimycin 14μM R08 exp527]]|0.098|| |[[:results:exp78|Pterostilbene 16μM R02 exp78]]|0.096|| |[[:results:exp531|THZ1 0.06μM R08 exp531]]|0.095|| |[[:results:exp525|Sulforaphane 9μM R08 exp525]]|0.094|| |[[:results:exp450|Artemisinin 50μM R08 exp450]]|0.092|| |[[:results:exp443|SNS-032 15μM R08 exp443]]|0.092|| |[[:results:exp357|Dorsomorphin 5μM R07 exp357]]|0.085|| |[[:results:exp199|Etoposide 0.3μM R05 exp199]]|0.085|| |[[:results:exp354|Diepoxybutane 3μM R07 exp354]]|0.084|| |[[:results:exp517|Quercetin 20μM R08 exp517]]|0.082|| |[[:results:exp526|Sulforaphane 9μM R08 exp526 no dilution day6]]|0.081|| |[[:results:exp28|Pimelic-diphenylamide-106 5μM R00 exp28]]|0.081|| |[[:results:exp234|Ethanol 0.01 R05 exp234]]|0.08|| |[[:results:exp106|UM131593 0.2μM R03 exp106]]|0.079|| |[[:results:exp485|GSK626616 14μM R08 exp485]]|0.079|| |[[:results:exp350|Deferoxamine 11μM R07 exp350]]|0.078|| |[[:results:exp474|CR131-b 0.005μM R08 exp474]]|0.078|| |[[:results:exp147|Resveratrol 16μM R03 exp147]]|0.076|| |[[:results:exp500|LY2090314 0.003μM R08 exp500 no dilution day6]]|0.074|| |[[:results:exp80|RO-3307 4.7μM R02 exp80]]|0.072|| |[[:results:exp468|CB-5083 0.4μM R08 exp468]]|0.071|| |[[:results:exp19|Etoposide 1μM R00 exp19]]|0.071|| |[[:results:exp294|Nutlin-3A 1.6μM R06 exp294]]|0.07|| |[[:results:exp520|Rucaparib 6.5μM R08 exp520]]|0.069|| |[[:results:exp532|TIC10 10μM R08 exp532]]|0.066|| |[[:results:exp84|UM0125461 0.74μM R02 exp84]]|0.065|| |[[:results:exp502|Milciclib 2μM R08 exp502]]|0.064|| |[[:results:exp85|UM0129480 7μM R02 exp85]]|0.064|| |[[:results:exp126|GSK461364A 0.1μM R03 exp126]]|0.064|| |[[:results:exp492|iCRT14 30μM R08 exp492]]|0.063|| |[[:results:exp34|Rotenone 20μM R00 exp34]]|0.062|| |[[:results:exp290|LLY-283 2.6μM R06 exp290]]|0.062|| |[[:results:exp355|Dinaciclib 0.007μM R07 exp355]]|0.062|| |[[:results:exp513|ONC212 0.15μM R08 exp513]]|0.06|| |[[:results:exp374|Latrunculin-B 10μM R07 exp374]]|0.058|| |[[:results:exp36|TRAIL 50ng/ml R00 exp36]]|0.057|| |[[:results:exp505|ML-792 0.2μM R08 exp505]]|0.056|| |[[:results:exp499|LY2090314 0.003μM R08 exp499]]|0.055|| |[[:results:exp67|BVD-523 15μM R02 exp67]]|0.054|| |[[:results:exp360|Genistein 15μM R07 exp360]]|0.054|| |[[:results:exp497|Lead acetate 2000μM R08 exp497]]|0.053|| |[[:results:exp21|MLN-4924 0.2μM R00 exp21]]|0.052|| |[[:results:exp346|CoCl2 18μM R07 exp346]]|0.052|| |[[:results:exp227|Cryptotanshinone 12μM R05 exp227]]|0.051|| |[[:results:exp211|AICAR 240μM R05 exp211]]|0.115|| |[[:results:exp116|AICAR 240μM R03 exp116]]|0.113|| |[[:results:exp2|5-Fluorouracil 20μM R00 exp2]]|0.107|| |[[:results:exp3|Actinomycin-D 0.001μM R00 exp3]]|0.091|| |[[:results:exp448|Ammonium tetrathiomolybdate 10μM R08 exp448]]|0.071|| |[[:results:exp259|6-Thio-2-deoxyguanosine 2μM R06 exp259]]|0.068|| |[[:results:exp539|42°C R08 exp539]]|0.062|| |[[:results:exp447|Amiloride 100μM R08 exp447]]|0.062|| |[[:results:exp175|3-Bromopyruvate 7μM R04 exp175]]|0.054|| {{:chemogenomics:comparison_plots:exp440_vs_exp512.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp456.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp488.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp503.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp489.png?nolink |}} {{:chemogenomics:comparison_plots:exp329_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp451.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp472.png?nolink |}} {{:chemogenomics:comparison_plots:exp435_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp529.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp478.png?nolink |}} {{:chemogenomics:comparison_plots:exp135_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp535.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp524.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp459.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp515.png?nolink |}} {{:chemogenomics:comparison_plots:exp134_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp441.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp527.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp78.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp531.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp525.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp450.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp443.png?nolink |}} {{:chemogenomics:comparison_plots:exp357_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp199_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp354_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp517.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp526.png?nolink |}} {{:chemogenomics:comparison_plots:exp28_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp234_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp106_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp485.png?nolink |}} {{:chemogenomics:comparison_plots:exp350_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp474.png?nolink |}} {{:chemogenomics:comparison_plots:exp147_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp500.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp80.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp468.png?nolink |}} {{:chemogenomics:comparison_plots:exp19_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp294_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp520.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp532.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp84.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp502.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp85.png?nolink |}} {{:chemogenomics:comparison_plots:exp126_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp492.png?nolink |}} {{:chemogenomics:comparison_plots:exp34_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp290_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp355_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp513.png?nolink |}} {{:chemogenomics:comparison_plots:exp374_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp36_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp505.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp499.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp67.png?nolink |}} {{:chemogenomics:comparison_plots:exp360_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp497.png?nolink |}} {{:chemogenomics:comparison_plots:exp21_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp346_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp227_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp211_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp116_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp2_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp3_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp448.png?nolink |}} {{:chemogenomics:comparison_plots:exp259_vs_exp440.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp539.png?nolink |}} {{:chemogenomics:comparison_plots:exp440_vs_exp447.png?nolink |}} {{:chemogenomics:comparison_plots:exp175_vs_exp440.png?nolink |}} No GO term hits below threshold. (FDR <0.05) ^GO Term^Fold Change^Genes^ |apoptosome|552.63|CASP9,APAF1| |activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c|331.58|CASP9,APAF1,CYCS| |glial cell apoptotic process|276.32|CASP9,TP53| |porin activity|221.05|BAK1,VDAC2| |TORC2 complex|207.24|MAPKAP1,MLST8,RICTOR| |positive regulation of mitochondrial membrane permeability|59.21|BAK1,VDAC2,TP53| |positive regulation of membrane permeability|53.48|BAK1,VDAC2,TP53| |intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress|50.24|BAK1,APAF1,TP53| |TOR signaling|47.37|MAPKAP1,MLST8,RICTOR| |intrinsic apoptotic signaling pathway|17.27|BAK1,CASP9,APAF1,TP53,CYCS| |cellular response to external stimulus|10.14|BAK1,MAPKAP1,MLST8,RICTOR,IRF1,TP53|