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Ask your administrator if you think this is wrong. ======= LRRK2 ======= == Gene Information == * **<color #00a2e8>Official Symbol</color>**: LRRK2 * **<color #00a2e8>Official Name</color>**: leucine rich repeat kinase 2 * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=120892|120892]] * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/Q5S007|Q5S007]] * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=LRRK2&organism=9606|BioGRID]] * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20LRRK2|Open PubMed]] * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/609007|Open OMIM]] == Function Summary == * **<color #00a2e8>Entrez Summary</color>**: This gene is a member of the leucine-rich repeat kinase family and encodes a protein with an ankryin repeat region, a leucine-rich repeat (LRR) domain, a kinase domain, a DFG-like motif, a RAS domain, a GTPase domain, a MLK-like domain, and a WD40 domain. The protein is present largely in the cytoplasm but also associates with the mitochondrial outer membrane. Mutations in this gene have been associated with Parkinson disease-8. [provided by RefSeq, Jul 2008]. * **<color #00a2e8>UniProt Summary</color>**: Positively regulates autophagy through a calcium- dependent activation of the CaMKK/AMPK signaling pathway. The process involves activation of nicotinic acid adenine dinucleotide phosphate (NAADP) receptors, increase in lysosomal pH, and calcium release from lysosomes. Together with RAB29, plays a role in the retrograde trafficking pathway for recycling proteins, such as mannose 6 phosphate receptor (M6PR), between lysosomes and the Golgi apparatus in a retromer-dependent manner. Regulates neuronal process morphology in the intact central nervous system (CNS). Plays a role in synaptic vesicle trafficking. Phosphorylates PRDX3. Has GTPase activity. May play a role in the phosphorylation of proteins central to Parkinson disease. {ECO:0000269|PubMed:17114044, ECO:0000269|PubMed:18230735, ECO:0000269|PubMed:20949042, ECO:0000269|PubMed:21850687, ECO:0000269|PubMed:22012985, ECO:0000269|PubMed:23395371, ECO:0000269|PubMed:24687852}. <button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button> <button type='primary' size='sm' modal='GO_terms'>GO Terms</button> <modal id='Pfam_Domains' size='lg' title='Pfam Domains'> |Ras| |LRR 4| |Miro| |Pkinase Tyr| |Pkinase| </modal> <modal id='GO_terms' size='lg' title='GO Terms'> |negative regulation of thioredoxin peroxidase activity| |negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation| |regulation of thioredoxin peroxidase activity| |peroxidase inhibitor activity| |negative regulation of peroxidase activity| |caveola neck| |GTP-dependent protein kinase activity| |Wnt signalosome assembly| |amphisome| |positive regulation of protein autoubiquitination| |cytoplasmic side of mitochondrial outer membrane| |negative regulation of protein processing involved in protein targeting to mitochondrion| |negative regulation of late endosome to lysosome transport| |regulation of peroxidase activity| |negative regulation of vacuolar transport| |beta-catenin destruction complex binding| |regulation of protein processing involved in protein targeting to mitochondrion| |multivesicular body, internal vesicle| |regulation of CAMKK-AMPK signaling cascade| |regulation of late endosome to lysosome transport| |regulation of retrograde transport, endosome to Golgi| |regulation of vacuolar transport| |positive regulation of dopamine receptor signaling pathway| |regulation of protein autoubiquitination| |regulation of kidney size| |regulation of branching morphogenesis of a nerve| |negative regulation of protein targeting to mitochondrion| |positive regulation of histone deacetylase activity| |tangential migration from the subventricular zone to the olfactory bulb| |positive regulation of synaptic vesicle endocytosis| |regulation of synaptic vesicle transport| |protein localization to endoplasmic reticulum exit site| |positive regulation of deacetylase activity| |negative regulation of establishment of protein localization to mitochondrion| |positive regulation of microglial cell activation| |autolysosome| |regulation of histone deacetylase activity| |positive regulation of synaptic vesicle recycling| |intracellular distribution of mitochondria| |regulation of neuron maturation| |negative regulation of excitatory postsynaptic potential| |neuron projection arborization| |regulation of deacetylase activity| |regulation of dopamine receptor signaling pathway| |positive regulation of cellular response to drug| |regulation of lysosomal lumen pH| |Wnt signalosome| |cellular response to manganese ion| |locomotory exploration behavior| |co-receptor binding| |negative regulation of autophagosome assembly| |presynaptic cytosol| |positive regulation of neuroinflammatory response| |positive regulation of nitric-oxide synthase biosynthetic process| |regulation of synaptic vesicle endocytosis| |negative regulation of response to reactive oxygen species| |regulation of ER to Golgi vesicle-mediated transport| |negative regulation of hydrogen peroxide-induced cell death| |mitochondrion distribution| |MAP kinase kinase activity| |determination of adult lifespan| |Golgi-associated vesicle| |regulation of microglial cell activation| |positive regulation of histone deacetylation| |striatum development| |response to manganese ion| |inclusion body| |regulation of nitric-oxide synthase biosynthetic process| |regulation of protein kinase A signaling| |positive regulation of tumor necrosis factor secretion| |negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway| |negative regulation of cellular response to drug| |regulation of mitochondrial depolarization| |receptor signaling complex adaptor activity| |positive regulation of protein deacetylation| |regulation of hydrogen peroxide-induced cell death| |regulation of mitochondrial fission| |regulation of cell maturation| |negative regulation of oxidoreductase activity| |regulation of synaptic vesicle recycling| |positive regulation of macrophage activation| |regulation of cytoplasmic transport| |subpallium development| |GTP metabolic process| |protein kinase A binding| |negative regulation of nervous system process| |exploration behavior| |syntaxin-1 binding| |negative regulation of response to drug| |regulation of histone deacetylation| |regulation of tumor necrosis factor secretion| |endoplasmic reticulum exit site| |Rho GTPase binding| |dendrite cytoplasm| |positive regulation of response to drug| |regulation of neuroinflammatory response| |regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway| |regulation of neuroblast proliferation| |olfactory bulb development| |negative regulation of protein maturation| |negative regulation of protein processing| |negative regulation of macroautophagy| |olfactory lobe development| |regulation of response to reactive oxygen species| |multicellular organism aging| |regulation of autophagosome assembly| |regulation of cellular response to drug| |negative regulation of organelle assembly| |clathrin binding| |modulation of excitatory postsynaptic potential| |guanosine-containing compound metabolic process| |negative regulation of intracellular protein transport| |neuromuscular junction development| |regulation of vacuole organization| |regulation of dendritic spine morphogenesis| |regulation of protein deacetylation| |negative regulation of response to endoplasmic reticulum stress| |regulation of protein targeting to mitochondrion| |regulation of membrane depolarization| |negative regulation of cellular response to oxidative stress| |negative regulation of oxidative stress-induced cell death| |mitochondrion localization| |negative regulation of GTPase activity| |negative regulation of response to oxidative stress| |terminal bouton| |regulation of macrophage activation| |neuron death| |negative regulation of mitochondrion organization| |activation of MAPKK activity| |tubulin binding| |endoplasmic reticulum organization| |regulation of morphogenesis of a branching structure| |telencephalon cell migration| |lytic vacuole organization| |lysosome organization| |purine ribonucleoside triphosphate metabolic process| |negative regulation of intracellular transport| |negative regulation of synaptic transmission| |forebrain cell migration| |purine ribonucleoside metabolic process| |microvillus| |regulation of oxidative stress-induced cell death| |excitatory postsynaptic potential| |purine nucleoside metabolic process| |regulation of stem cell proliferation| |SNARE binding| |regulation of protein processing| |ribonucleoside triphosphate metabolic process| |chemical synaptic transmission, postsynaptic| |purine nucleoside triphosphate metabolic process| |synaptic vesicle membrane| |regulation of protein maturation| |regulation of synaptic transmission, glutamatergic| |regulation of mitochondrial membrane potential| |regulation of establishment of protein localization to mitochondrion| |regulation of dendritic spine development| |regulation of cellular response to oxidative stress| |ribonucleoside metabolic process| |protein localization to mitochondrion| |regulation of synaptic vesicle exocytosis| |kinase activity| |peptidyl-threonine phosphorylation| |positive regulation of proteasomal ubiquitin-dependent protein catabolic process| |regulation of protein targeting| |postsynapse| |negative regulation of autophagy| |regulation of response to endoplasmic reticulum stress| |regulation of intracellular pH| |kidney morphogenesis| |regulation of response to oxidative stress| |cellular response to dopamine| |positive regulation of tumor necrosis factor production| |response to dopamine| |regulation of neural precursor cell proliferation| |positive regulation of tumor necrosis factor superfamily cytokine production| |canonical Wnt signaling pathway| |regulation of dendrite morphogenesis| |regulation of cellular pH| |peptidyl-threonine modification| |positive regulation of histone modification| |nucleoside triphosphate metabolic process| |positive regulation of protein binding| |negative regulation of intrinsic apoptotic signaling pathway| |regulation of oxidoreductase activity| |protein import into nucleus| |regulation of postsynapse organization| |regulation of calcium-mediated signaling| |positive regulation of ubiquitin-dependent protein catabolic process| |regulation of pH| |regulation of response to drug| |positive regulation of endocytosis| |regulation of postsynaptic membrane potential| |cellular response to catecholamine stimulus| |cellular response to monoamine stimulus| |mitochondrial membrane| |negative regulation of protein binding| |positive regulation of chromatin organization| |positive regulation of proteasomal protein catabolic process| |regulation of neurotransmitter secretion| |response to catecholamine| |response to monoamine| |nucleoside metabolic process| |cellular monovalent inorganic cation homeostasis| |negative regulation of cellular protein localization| |regulation of synaptic vesicle cycle| |reactive oxygen species metabolic process| |import into nucleus| |positive regulation of protein ubiquitination| |positive regulation of autophagy| |positive regulation of proteolysis involved in cellular protein catabolic process| |regulation of proteasomal ubiquitin-dependent protein catabolic process| |ion channel binding| |growth cone| |vacuole organization| |cellular response to ammonium ion| |Golgi organization| |positive regulation of protein modification by small protein conjugation or removal| |glycosyl compound metabolic process| |perikaryon| |protein localization to endoplasmic reticulum| |regulation of nervous system process| |positive regulation of inflammatory response| |positive regulation of cytokine secretion| |monovalent inorganic cation homeostasis| |positive regulation of cellular protein catabolic process| |protein import| |regulation of neurotransmitter transport| |positive regulation of canonical Wnt signaling pathway| |calcium-mediated signaling| |regulation of histone modification| |regulation of tumor necrosis factor production| |regulation of dendrite development| |cellular response to starvation| |regulation of tumor necrosis factor superfamily cytokine production| |regulation of ubiquitin-dependent protein catabolic process| |negative regulation of neuron projection development| |ribonucleoprotein complex| |activation of MAPK activity| |regulation of intrinsic apoptotic signaling pathway| |protein localization to nucleus| |mitochondrial outer membrane| |regulation of regulated secretory pathway| |negative regulation of binding| |trans-Golgi network| |regulation of macroautophagy| |peptidyl-serine phosphorylation| |positive regulation of chromosome organization| |positive regulation of Wnt signaling pathway| |positive regulation of binding| |regulation of mitochondrion organization| |negative regulation of cell projection organization| |negative regulation of protein transport| |regulation of proteasomal protein catabolic process| |response to ammonium ion| |negative regulation of establishment of protein localization| |regulation of chromatin organization| |cellular response to metal ion| |response to starvation| |protein autophosphorylation| |locomotory behavior| |peptidyl-serine modification| |regulation of protein ubiquitination| |regulation of cytokine secretion| |regulation of endocytosis| |negative regulation of neuron death| |magnesium ion binding| |positive regulation of protein catabolic process| |regulation of proteolysis involved in cellular protein catabolic process| |regulation of synapse organization| |regulation of protein binding| |regulation of organelle assembly| |cellular response to inorganic substance| |regulation of exocytosis| |membrane raft| |negative regulation of neuron differentiation| |negative regulation of apoptotic signaling pathway| |regulation of synapse structure or activity| |regulation of protein modification by small protein conjugation or removal| |regulation of intracellular protein transport| |cellular response to nutrient levels| |protein kinase activity| |microtubule binding| |cellular response to oxidative stress| |regulation of cellular protein catabolic process| |lysosome| |negative regulation of cellular catabolic process| |cytoplasmic vesicle| |telencephalon development| |autophagy| |positive regulation of MAP kinase activity| |process utilizing autophagic mechanism| |nucleocytoplasmic transport| |cellular response to extracellular stimulus| |nuclear transport| |kidney development| |actin binding| |positive regulation of protein secretion| |endosome| |synapse organization| |aging| |regulation of canonical Wnt signaling pathway| |GTPase activator activity| |renal system development| |regulation of protein stability| |positive regulation of peptide secretion| |negative regulation of neurogenesis| |axon| |regulation of cell morphogenesis involved in differentiation| |negative regulation of catabolic process| |regulation of neuron death| |negative regulation of nervous system development| |purine ribonucleotide metabolic process| |urogenital system development| |neuron projection| |ribonucleotide metabolic process| |activation of protein kinase activity| |GTPase activity| |purine nucleotide metabolic process| |regulation of autophagy| |negative regulation of cell development| |cellular response to external stimulus| |ribose phosphate metabolic process| |second-messenger-mediated signaling| |regulation of inflammatory response| |positive regulation of protein serine/threonine kinase activity| |regulation of MAP kinase activity| |glutamatergic synapse| |regulation of chromosome organization| |regulation of intracellular transport| |negative regulation of proteolysis| |regulation of neurotransmitter levels| |cell-cell signaling by wnt| |positive regulation of proteolysis| |Wnt signaling pathway| |regulation of Wnt signaling pathway| |protein serine/threonine kinase activity| |positive regulation of cellular catabolic process| |purine-containing compound metabolic process| |mitochondrial matrix| |response to metal ion| |MAPK cascade| |neuronal cell body| |negative regulation of organelle organization| |regulation of binding| |regulation of protein catabolic process| |response to oxidative stress| |forebrain development| |GTP binding| |signal transduction by protein phosphorylation| |mitochondrial inner membrane| |regulation of apoptotic signaling pathway| |cellular response to drug| |positive regulation of secretion by cell| |positive regulation of leukocyte activation| |negative regulation of protein phosphorylation| |positive regulation of GTPase activity| |positive regulation of cell activation| |endomembrane system organization| |dendrite| |chemical synaptic transmission| |anterograde trans-synaptic signaling| |positive regulation of protein transport| |cell surface receptor signaling pathway involved in cell-cell signaling| |regulation of membrane potential| |establishment of protein localization to organelle| |positive regulation of catabolic process| |positive regulation of secretion| |trans-synaptic signaling| |mitochondrion organization| |modulation of chemical synaptic transmission| |regulation of trans-synaptic signaling| |negative regulation of phosphorylation| |nucleotide metabolic process| |positive regulation of cytokine production| |nucleoside phosphate metabolic process| |negative regulation of hydrolase activity| |positive regulation of establishment of protein localization| |synaptic signaling| |regulation of protein secretion| |positive regulation of defense response| |neuron projection morphogenesis| |regulation of GTPase activity| |plasma membrane bounded cell projection morphogenesis| |negative regulation of transport| |regulation of cell morphogenesis| |cell projection morphogenesis| |regulation of peptide secretion| |regulation of neuron projection development| |response to nutrient levels| |negative regulation of intracellular signal transduction| |cell part morphogenesis| |regulation of anatomical structure size| |regulation of protein serine/threonine kinase activity| |response to extracellular stimulus| |positive regulation of protein kinase activity| |response to inorganic substance| |regulation of cellular protein localization| |nucleobase-containing small molecule metabolic process| |cellular response to organic cyclic compound| |positive regulation of MAPK cascade| |spermatogenesis| |cell junction| |regulation of vesicle-mediated transport| |endocytosis| |negative regulation of phosphate metabolic process| |negative regulation of phosphorus metabolic process| |male gamete generation| |behavior| |positive regulation of kinase activity| |organelle localization| |regulation of system process| |negative regulation of protein modification process| |cellular response to organonitrogen compound| |positive regulation of response to external stimulus| |regulation of leukocyte activation| |positive regulation of organelle organization| |cellular cation homeostasis| |regulation of cell activation| |cellular ion homeostasis| |positive regulation of programmed cell death| |regulation of neuron differentiation| |positive regulation of transferase activity| |cellular response to nitrogen compound| |neuron projection development| |import into cell| |intracellular membrane-bounded organelle| |gamete generation| |regulation of cytokine production| |regulation of plasma membrane bounded cell projection organization| |positive regulation of cell death| |negative regulation of cellular component organization| |cation homeostasis| |regulation of protein transport| |regulation of cell projection organization| |negative regulation of cell differentiation| |inorganic ion homeostasis| |cell morphogenesis| |regulation of proteolysis| |regulation of cellular response to stress| |protein localization to organelle| |regulation of peptide transport| |brain development| |cellular chemical homeostasis| |regulation of establishment of protein localization| |regulation of secretion by cell| |regulation of MAPK cascade| |regulation of defense response| |positive regulation of hydrolase activity| |head development| |ion homeostasis| |negative regulation of catalytic activity| |regulation of protein kinase activity| |regulation of secretion| |neuron development| |regulation of neurogenesis| |cellular component morphogenesis| |multicellular organismal reproductive process| |sexual reproduction| |regulation of cellular catabolic process| |multicellular organism reproduction| |regulation of kinase activity| |protein homodimerization activity| |peptidyl-amino acid modification| |organophosphate metabolic process| |negative regulation of apoptotic process| |cellular homeostasis| |negative regulation of programmed cell death| |regulation of cellular localization| |response to organic cyclic compound| |regulation of nervous system development| |regulation of cell development| |negative regulation of developmental process| |animal organ morphogenesis| |regulation of cellular component biogenesis| |cell migration| |protein phosphorylation| |regulation of transferase activity| |central nervous system development| |regulation of locomotion| |Golgi apparatus| |positive regulation of transport| |negative regulation of cell death| |multi-organism reproductive process| |regulation of catabolic process| |intracellular protein transport| |response to organonitrogen compound| |endoplasmic reticulum| |neuron differentiation| |positive regulation of protein phosphorylation| |response to drug| |positive regulation of intracellular signal transduction| |regulation of protein localization| |carbohydrate derivative metabolic process| |negative regulation of cellular protein metabolic process| |cellular response to oxygen-containing compound| |positive regulation of phosphorylation| |regulation of anatomical structure morphogenesis| |identical protein binding| |cell motility| |localization of cell| |response to nitrogen compound| |cell death| |regulation of response to external stimulus| |negative regulation of protein metabolic process| |chemical homeostasis| |cell-cell signaling| |plasma membrane bounded cell projection organization| |positive regulation of phosphorus metabolic process| |positive regulation of phosphate metabolic process| |negative regulation of molecular function| |positive regulation of immune system process| |cell projection organization| |negative regulation of multicellular organismal process| |positive regulation of cellular component organization| |cellular response to endogenous stimulus| |positive regulation of protein modification process| |mitochondrion| |negative regulation of signal transduction| |regulation of hydrolase activity| |phosphorylation| |regulation of organelle organization| |locomotion| |negative regulation of cell communication| |negative regulation of signaling| |nervous system process| |reproductive process| |reproduction| |positive regulation of catalytic activity| |regulation of protein phosphorylation| |response to endogenous stimulus| |regulation of response to stress| |ATP binding| |protein transport| |intracellular transport| |generation of neurons| |peptide transport| |regulation of apoptotic process| |movement of cell or subcellular component| |response to oxygen-containing compound| |protein-containing complex assembly| |regulation of programmed cell death| |amide transport| |cellular protein localization| |regulation of phosphorylation| |cellular macromolecule localization| |extracellular space| |positive regulation of cellular protein metabolic process| |establishment of protein localization| |regulation of cell population proliferation| |negative regulation of response to stimulus| |neurogenesis| |homeostatic process| |cell development| |positive regulation of signal transduction| |regulation of immune system process| |regulation of cell death| |intracellular signal transduction| |cellular response to stress| |positive regulation of protein metabolic process| |negative regulation of gene expression| |positive regulation of multicellular organismal process| |small molecule metabolic process| |positive regulation of molecular function| |regulation of phosphate metabolic process| |regulation of phosphorus metabolic process| |cellular catabolic process| |regulation of cell differentiation| |positive regulation of cell communication| |positive regulation of signaling| |regulation of intracellular signal transduction| |establishment of localization in cell| |nitrogen compound transport| |regulation of protein modification process| |protein-containing complex subunit organization| |regulation of transport| |positive regulation of macromolecule biosynthetic process| |vesicle-mediated transport| |system process| |positive regulation of biosynthetic process| </modal> \\ === CRISPR Data === <button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button> <button type='default' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button> <button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button> <modal id='Compound_Hit' size='lg' title='Compound Hit'> ^Screen^Score^ |[[:results:exp516|Pyrazinamide 100μM R08 exp516]]|-1.81| </modal> <modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'> No correlation found to any other genes in chemogenomics. </modal> <modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'> Global Fraction of Cell Lines Where Essential: 0/739 ^Tissue^Fraction Of Cell Lines Where Essential^ |1290807.0|0/1| |909776.0|0/1| |bile duct|0/28| |blood|0/28| |bone|0/26| |breast|0/33| |central nervous system|0/56| |cervix|0/4| |colorectal|0/17| |esophagus|0/13| |fibroblast|0/1| |gastric|0/16| |kidney|0/21| |liver|0/20| |lung|0/75| |lymphocyte|0/16| |ovary|0/26| |pancreas|0/24| |peripheral nervous system|0/16| |plasma cell|0/15| |prostate|0/1| |skin|0/24| |soft tissue|0/9| |thyroid|0/2| |upper aerodigestive|0/22| |urinary tract|0/29| |uterus|0/5| </modal> == Essentiality in NALM6 == * **<color #00a2e8>Essentiality Rank</color>**: 6392 * **<color #00a2e8>Expression level (log2 read counts)</color>**: -5.6 <button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button> <modal id='Dist_expr' size='lg' title='LRRK2 Expression in NALM6 Cells: -5.6'> {{:chemogenomics:nalm6 dist.png?nolink |}} </modal> Last modified: 2025/12/10 20:19by 127.0.0.1