LUM [The Human Chemical-Genetic Interaction Map Project]

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======= LUM =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: LUM
  * **<color #00a2e8>Official Name</color>**: lumican
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=4060|4060]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/P51884|P51884]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=LUM&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20LUM|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/600616|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**: N/A
  * **<color #00a2e8>UniProt Summary</color>**: N/A

<button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
|LRRNT|
|LRR 4|
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|fibrillar collagen trimer|
|positive regulation of transforming growth factor beta1 production|
|regulation of transforming growth factor beta1 production|
|keratan sulfate catabolic process|
|extracellular matrix structural constituent conferring compression resistance|
|positive regulation of transforming growth factor beta production|
|keratan sulfate biosynthetic process|
|keratan sulfate metabolic process|
|regulation of transforming growth factor beta production|
|collagen fibril organization|
|sulfur compound catabolic process|
|glycosaminoglycan catabolic process|
|collagen binding|
|aminoglycan catabolic process|
|lysosomal lumen|
|Golgi lumen|
|glycosaminoglycan biosynthetic process|
|mucopolysaccharide metabolic process|
|aminoglycan biosynthetic process|
|extracellular matrix structural constituent|
|glycosaminoglycan metabolic process|
|aminoglycan metabolic process|
|cartilage development|
|sulfur compound biosynthetic process|
|carbohydrate derivative catabolic process|
|visual perception|
|connective tissue development|
|sensory perception of light stimulus|
|extracellular matrix|
|extracellular matrix organization|
|collagen-containing extracellular matrix|
|sulfur compound metabolic process|
|extracellular structure organization|
|positive regulation of cytokine production|
|supramolecular fiber organization|
|skeletal system development|
|response to growth factor|
|carbohydrate derivative biosynthetic process|
|regulation of cytokine production|
|response to organic cyclic compound|
|sensory perception|
|oxoacid metabolic process|
|organic acid metabolic process|
|carbohydrate derivative metabolic process|
|macromolecule catabolic process|
|organonitrogen compound catabolic process|
|positive regulation of transcription by RNA polymerase II|
|nervous system process|
|organonitrogen compound biosynthetic process|
|positive regulation of transcription, DNA-templated|
|extracellular space|
|positive regulation of nucleic acid-templated transcription|
|positive regulation of RNA biosynthetic process|
|positive regulation of RNA metabolic process|
|positive regulation of multicellular organismal process|
|small molecule metabolic process|
|tissue development|
|macromolecule biosynthetic process|
|organic substance catabolic process|
|cellular catabolic process|
|protein-containing complex subunit organization|
|positive regulation of nucleobase-containing compound metabolic process|
|positive regulation of macromolecule biosynthetic process|
|extracellular region|
|system process|
|positive regulation of cellular biosynthetic process|
|positive regulation of gene expression|
|positive regulation of biosynthetic process|
</modal>
\\

 === CRISPR Data ===
<button type='default' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='default' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
No hits were found.
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
No correlation found to any other genes in chemogenomics.
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 0/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|0/1|
|bile duct|0/28|
|blood|0/28|
|bone|0/26|
|breast|0/33|
|central nervous system|0/56|
|cervix|0/4|
|colorectal|0/17|
|esophagus|0/13|
|fibroblast|0/1|
|gastric|0/16|
|kidney|0/21|
|liver|0/20|
|lung|0/75|
|lymphocyte|0/16|
|ovary|0/26|
|pancreas|0/24|
|peripheral nervous system|0/16|
|plasma cell|0/15|
|prostate|0/1|
|skin|0/24|
|soft tissue|0/9|
|thyroid|0/2|
|upper aerodigestive|0/22|
|urinary tract|0/29|
|uterus|0/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 14874
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: -7.68 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='LUM Expression in NALM6 Cells: -7.68'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>