PTCD2 [The Human Chemical-Genetic Interaction Map Project]

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======= PTCD2 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: PTCD2
  * **<color #00a2e8>Official Name</color>**: pentatricopeptide repeat domain 2
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=79810|79810]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/Q8WV60|Q8WV60]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=PTCD2&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20PTCD2|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/615484|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**: N/A
  * **<color #00a2e8>UniProt Summary</color>**:  Involved in mitochondrial RNA maturation and mitochondrial respiratory chain function. {ECO:0000250}.

<button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
|MRP-S27|
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|ventricular cardiac muscle tissue morphogenesis|
|ventricular cardiac muscle tissue development|
|muscle fiber development|
|cardiac muscle tissue morphogenesis|
|cardiac ventricle morphogenesis|
|muscle tissue morphogenesis|
|muscle organ morphogenesis|
|liver development|
|cardiac chamber morphogenesis|
|cardiac ventricle development|
|hepaticobiliary system development|
|striated muscle cell development|
|regulation of mRNA processing|
|muscle cell development|
|cardiac muscle tissue development|
|cardiac chamber development|
|striated muscle cell differentiation|
|muscle cell differentiation|
|heart morphogenesis|
|kidney development|
|renal system development|
|striated muscle tissue development|
|muscle organ development|
|muscle tissue development|
|urogenital system development|
|regulation of mRNA metabolic process|
|gland development|
|mitochondrion organization|
|muscle structure development|
|mRNA processing|
|heart development|
|tissue morphogenesis|
|mRNA metabolic process|
|circulatory system development|
|RNA processing|
|animal organ morphogenesis|
|mitochondrion|
|RNA binding|
|cell development|
|RNA metabolic process|
|tissue development|
|gene expression|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='primary' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp496|Lead acetate 990μM R08 exp496]]|-1.89|
|[[:results:exp224|CB-839 10μM R05 exp224]]|-1.79|
|[[:results:exp264|Arsenate 40μM R06 exp264]]|1.77|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
^Gene^Correlation^
|[[:human genes:p:pet117|PET117]]|0.428|
|[[:human genes:m:mtif2|MTIF2]]|0.412|
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 0/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|0/1|
|bile duct|0/28|
|blood|0/28|
|bone|0/26|
|breast|0/33|
|central nervous system|0/56|
|cervix|0/4|
|colorectal|0/17|
|esophagus|0/13|
|fibroblast|0/1|
|gastric|0/16|
|kidney|0/21|
|liver|0/20|
|lung|0/75|
|lymphocyte|0/16|
|ovary|0/26|
|pancreas|0/24|
|peripheral nervous system|0/16|
|plasma cell|0/15|
|prostate|0/1|
|skin|0/24|
|soft tissue|0/9|
|thyroid|0/2|
|upper aerodigestive|0/22|
|urinary tract|0/29|
|uterus|0/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 2796
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 5.42 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='PTCD2 Expression in NALM6 Cells: 5.42'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>