RHOT1 [The Human Chemical-Genetic Interaction Map Project]

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
======= RHOT1 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: RHOT1
  * **<color #00a2e8>Official Name</color>**: ras homolog family member T1
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=55288|55288]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/Q8IXI2|Q8IXI2]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=RHOT1&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20RHOT1|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/613888|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**: N/A
  * **<color #00a2e8>UniProt Summary</color>**: N/A

<button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
|EF assoc 1|
|Miro|
|Ras|
|EF assoc 2|
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|microtubule polymerization based movement|
|establishment of mitochondrion localization by microtubule attachment|
|regulation of organelle transport along microtubule|
|mitochondrial outer membrane permeabilization|
|positive regulation of mitochondrial membrane permeability involved in apoptotic process|
|mitochondrial outer membrane permeabilization involved in programmed cell death|
|integral component of mitochondrial outer membrane|
|mitochondrion transport along microtubule|
|positive regulation of mitochondrial membrane permeability|
|establishment of mitochondrion localization, microtubule-mediated|
|regulation of mitochondrial membrane permeability involved in apoptotic process|
|positive regulation of membrane permeability|
|establishment of mitochondrion localization|
|regulation of microtubule-based movement|
|mitochondrion localization|
|apoptotic mitochondrial changes|
|regulation of mitochondrial membrane permeability|
|Rho protein signal transduction|
|organelle transport along microtubule|
|regulation of membrane permeability|
|regulation of neurotransmitter secretion|
|mitochondrial membrane organization|
|regulation of neurotransmitter transport|
|transport along microtubule|
|mitochondrial outer membrane|
|cytoskeleton-dependent intracellular transport|
|regulation of mitochondrion organization|
|microtubule-based transport|
|mitochondrial transport|
|regulation of microtubule-based process|
|Ras protein signal transduction|
|microtubule-based movement|
|protein deubiquitination|
|apoptotic signaling pathway|
|protein modification by small protein removal|
|small GTPase mediated signal transduction|
|GTPase activity|
|regulation of small GTPase mediated signal transduction|
|regulation of intracellular transport|
|regulation of neurotransmitter levels|
|establishment of organelle localization|
|GTP binding|
|modulation of chemical synaptic transmission|
|mitochondrion organization|
|regulation of trans-synaptic signaling|
|organelle localization|
|microtubule-based process|
|calcium ion binding|
|regulation of secretion by cell|
|molecular function|
|regulation of secretion|
|membrane organization|
|cellular homeostasis|
|regulation of cellular localization|
|apoptotic process|
|protein modification by small protein conjugation or removal|
|regulation of cellular component movement|
|programmed cell death|
|cell death|
|mitochondrion|
|proteolysis|
|regulation of organelle organization|
|intracellular transport|
|movement of cell or subcellular component|
|homeostatic process|
|intracellular signal transduction|
|regulation of intracellular signal transduction|
|establishment of localization in cell|
|regulation of transport|
|membrane|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='default' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp500|LY2090314 0.003μM R08 exp500 no dilution day6]]|-1.84|
|[[:results:exp393|Resminostat 0.5μM R07 exp393]]|1.72|
|[[:results:exp465|Cannabidiol 13μM R08 exp465]]|1.75|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
No correlation found to any other genes in chemogenomics.
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 0/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|0/1|
|bile duct|0/28|
|blood|0/28|
|bone|0/26|
|breast|0/33|
|central nervous system|0/56|
|cervix|0/4|
|colorectal|0/17|
|esophagus|0/13|
|fibroblast|0/1|
|gastric|0/16|
|kidney|0/21|
|liver|0/20|
|lung|0/75|
|lymphocyte|0/16|
|ovary|0/26|
|pancreas|0/24|
|peripheral nervous system|0/16|
|plasma cell|0/15|
|prostate|0/1|
|skin|0/24|
|soft tissue|0/9|
|thyroid|0/2|
|upper aerodigestive|0/22|
|urinary tract|0/29|
|uterus|0/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 7099
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 4.99 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='RHOT1 Expression in NALM6 Cells: 4.99'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>