RPL13 [The Human Chemical-Genetic Interaction Map Project]

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======= RPL13 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: RPL13
  * **<color #00a2e8>Official Name</color>**: ribosomal protein L13
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=6137|6137]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/P26373|P26373]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=RPL13&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20RPL13|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/113703|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**: N/A
  * **<color #00a2e8>UniProt Summary</color>**: N/A

<button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
|Ribosomal L13e|
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|cytosolic ribosome|
|cytosolic large ribosomal subunit|
|SRP-dependent cotranslational protein targeting to membrane|
|cotranslational protein targeting to membrane|
|protein targeting to ER|
|establishment of protein localization to endoplasmic reticulum|
|viral transcription|
|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|
|viral gene expression|
|protein localization to endoplasmic reticulum|
|translational initiation|
|protein targeting to membrane|
|structural constituent of ribosome|
|nuclear-transcribed mRNA catabolic process|
|mRNA catabolic process|
|RNA catabolic process|
|establishment of protein localization to membrane|
|protein targeting|
|nucleobase-containing compound catabolic process|
|translation|
|peptide biosynthetic process|
|establishment of protein localization to organelle|
|heterocycle catabolic process|
|cellular nitrogen compound catabolic process|
|aromatic compound catabolic process|
|organic cyclic compound catabolic process|
|protein localization to membrane|
|amide biosynthetic process|
|peptide metabolic process|
|mRNA metabolic process|
|viral process|
|protein localization to organelle|
|symbiotic process|
|cellular amide metabolic process|
|interspecies interaction between organisms|
|nucleolus|
|cellular macromolecule catabolic process|
|intracellular protein transport|
|endoplasmic reticulum|
|macromolecule catabolic process|
|RNA binding|
|organonitrogen compound biosynthetic process|
|protein transport|
|intracellular transport|
|peptide transport|
|amide transport|
|cellular protein localization|
|cellular macromolecule localization|
|establishment of protein localization|
|cellular nitrogen compound biosynthetic process|
|RNA metabolic process|
|cellular macromolecule biosynthetic process|
|negative regulation of gene expression|
|macromolecule biosynthetic process|
|organic substance catabolic process|
|cellular catabolic process|
|establishment of localization in cell|
|nitrogen compound transport|
|membrane|
|gene expression|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='primary' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp414|Tozasertib 0.1μM R07 exp414]]|-2.04|
|[[:results:exp233|EPZ-5676 30μM R05 exp233]]|-1.96|
|[[:results:exp28|Pimelic-diphenylamide-106 5μM R00 exp28]]|-1.9|
|[[:results:exp34|Rotenone 20μM R00 exp34]]|-1.86|
|[[:results:exp478|Doxorubicin 0.02μM R08 exp478]]|-1.84|
|[[:results:exp3|Actinomycin-D 0.001μM R00 exp3]]|-1.79|
|[[:results:exp208|Vinblastine 0.015μM R05 exp208]]|-1.79|
|[[:results:exp443|SNS-032 15μM R08 exp443]]|-1.71|
|[[:results:exp41|BI-2536 0.001μM R01 exp41]]|1.8|
|[[:results:exp530|Thioridazine 5μM R08 exp530]]|1.87|
|[[:results:exp477|DKK1 89ng/ml R08 exp477]]|1.88|
|[[:results:exp505|ML-792 0.2μM R08 exp505]]|2|
|[[:results:exp263|Aphidicolin 0.04μM R06 exp263]]|2.04|
|[[:results:exp45|Docetaxel 0.002μM R01 exp45]]|2.1|
|[[:results:exp61|YM155 0.0002μM R01 exp61]]|2.29|
|[[:results:exp300|VE-822 0.04μM R06 exp300]]|2.67|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
^Gene^Correlation^
|[[:human genes:p:polr2j3|POLR2J3]]|0.484|
|[[:human genes:r:rpl6|RPL6]]|0.463|
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 665/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|1/1|
|909776.0|1/1|
|bile duct|26/28|
|blood|25/28|
|bone|23/26|
|breast|31/33|
|central nervous system|52/56|
|cervix|4/4|
|colorectal|13/17|
|esophagus|12/13|
|fibroblast|1/1|
|gastric|16/16|
|kidney|20/21|
|liver|17/20|
|lung|65/75|
|lymphocyte|15/16|
|ovary|24/26|
|pancreas|19/24|
|peripheral nervous system|14/16|
|plasma cell|14/15|
|prostate|1/1|
|skin|24/24|
|soft tissue|8/9|
|thyroid|2/2|
|upper aerodigestive|19/22|
|urinary tract|25/29|
|uterus|5/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 147
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 9.24 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='RPL13 Expression in NALM6 Cells: 9.24'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>