RPS25 [The Human Chemical-Genetic Interaction Map Project]

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======= RPS25 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: RPS25
  * **<color #00a2e8>Official Name</color>**: ribosomal protein S25
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=6230|6230]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/P62851|P62851]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=RPS25&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20RPS25|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/180465|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**: N/A
  * **<color #00a2e8>UniProt Summary</color>**: N/A

<button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
|Ribosomal S25|
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|small ribosomal subunit|
|ribosome|
|cytosolic small ribosomal subunit|
|SRP-dependent cotranslational protein targeting to membrane|
|cotranslational protein targeting to membrane|
|protein targeting to ER|
|establishment of protein localization to endoplasmic reticulum|
|viral transcription|
|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|
|viral gene expression|
|protein localization to endoplasmic reticulum|
|translational initiation|
|protein targeting to membrane|
|structural constituent of ribosome|
|nuclear-transcribed mRNA catabolic process|
|mRNA catabolic process|
|RNA catabolic process|
|postsynaptic density|
|establishment of protein localization to membrane|
|protein targeting|
|nucleobase-containing compound catabolic process|
|translation|
|peptide biosynthetic process|
|establishment of protein localization to organelle|
|heterocycle catabolic process|
|cellular nitrogen compound catabolic process|
|aromatic compound catabolic process|
|organic cyclic compound catabolic process|
|protein localization to membrane|
|amide biosynthetic process|
|peptide metabolic process|
|mRNA metabolic process|
|viral process|
|protein localization to organelle|
|symbiotic process|
|cellular amide metabolic process|
|interspecies interaction between organisms|
|nucleolus|
|cellular macromolecule catabolic process|
|intracellular protein transport|
|macromolecule catabolic process|
|RNA binding|
|organonitrogen compound biosynthetic process|
|protein transport|
|intracellular transport|
|peptide transport|
|amide transport|
|cellular protein localization|
|cellular macromolecule localization|
|establishment of protein localization|
|cellular nitrogen compound biosynthetic process|
|RNA metabolic process|
|cellular macromolecule biosynthetic process|
|negative regulation of gene expression|
|macromolecule biosynthetic process|
|organic substance catabolic process|
|cellular catabolic process|
|establishment of localization in cell|
|nitrogen compound transport|
|gene expression|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='primary' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp356|Docosahexaenoic-acid 50μM R07 exp356]]|-2.58|
|[[:results:exp400|Senexin-A 25μM R07 exp400]]|-1.9|
|[[:results:exp525|Sulforaphane 9μM R08 exp525]]|1.7|
|[[:results:exp216|Erlotinib 10μM R05 exp216]]|1.81|
|[[:results:exp524|Staurosporine 0.02μM R08 exp524]]|1.82|
|[[:results:exp282|Fluvastatin 2.2μM R06 exp282]]|1.84|
|[[:results:exp407|Thapsigargin 0.005μM R07 exp407]]|1.91|
|[[:results:exp450|Artemisinin 50μM R08 exp450]]|2.02|
|[[:results:exp79|Q15 2.7μM R02 exp79]]|2.19|
|[[:results:exp259|6-Thio-2-deoxyguanosine 2μM R06 exp259]]|2.32|
|[[:results:exp21|MLN-4924 0.2μM R00 exp21]]|2.48|
|[[:results:exp349|Cytochalasin-B 5μM R07 exp349]]|2.54|
|[[:results:exp363|GSK-J4 1-1.25μM to day4 R07 exp363]]|2.66|
|[[:results:exp6|Bortezomib 0.005μM R00 exp6]]|2.71|
|[[:results:exp234|Ethanol 0.01 R05 exp234]]|2.8|
|[[:results:exp214|2-Deoxy-D-glucose 800μM R05 exp214]]|2.89|
|[[:results:exp468|CB-5083 0.4μM R08 exp468]]|3.41|
|[[:results:exp512|Olaparib 4μM R08 exp512]]|3.55|
|[[:results:exp505|ML-792 0.2μM R08 exp505]]|4.34|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
^Gene^Correlation^
|[[:human genes:e:eif4a1|EIF4A1]]|0.46|
|[[:human genes:c:cnbp|CNBP]]|0.434|
|[[:human genes:t:tfdp1|TFDP1]]|0.401|
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 717/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|1/1|
|bile duct|27/28|
|blood|26/28|
|bone|24/26|
|breast|32/33|
|central nervous system|56/56|
|cervix|4/4|
|colorectal|17/17|
|esophagus|13/13|
|fibroblast|1/1|
|gastric|16/16|
|kidney|20/21|
|liver|20/20|
|lung|73/75|
|lymphocyte|16/16|
|ovary|25/26|
|pancreas|24/24|
|peripheral nervous system|16/16|
|plasma cell|12/15|
|prostate|1/1|
|skin|24/24|
|soft tissue|9/9|
|thyroid|2/2|
|upper aerodigestive|21/22|
|urinary tract|29/29|
|uterus|5/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 1021
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 8.98 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='RPS25 Expression in NALM6 Cells: 8.98'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>