SCARF1 [The Human Chemical-Genetic Interaction Map Project]

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======= SCARF1 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: SCARF1
  * **<color #00a2e8>Official Name</color>**: scavenger receptor class F member 1
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=8578|8578]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/Q14162|Q14162]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=SCARF1&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20SCARF1|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/607873|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**: N/A
  * **<color #00a2e8>UniProt Summary</color>**:  Mediates the binding and degradation of acetylated low density lipoprotein (Ac-LDL). Mediates heterophilic interactions, suggesting a function as adhesion protein. Plays a role in the regulation of neurite-like outgrowth (By similarity). {ECO:0000250}.

<button type='default' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
No Pfam Domain information is available for this gene.
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|positive regulation of axon regeneration|
|positive regulation of neuron projection regeneration|
|neuron remodeling|
|cholesterol catabolic process|
|sterol catabolic process|
|low-density lipoprotein particle binding|
|regulation of axon regeneration|
|steroid catabolic process|
|regulation of neuron projection regeneration|
|neuron maturation|
|scavenger receptor activity|
|alcohol catabolic process|
|positive regulation of response to wounding|
|endocytic vesicle membrane|
|organic hydroxy compound catabolic process|
|dendrite development|
|cholesterol metabolic process|
|secondary alcohol metabolic process|
|sterol metabolic process|
|anatomical structure maturation|
|transmembrane signaling receptor activity|
|cell maturation|
|regulation of response to wounding|
|receptor-mediated endocytosis|
|developmental maturation|
|steroid metabolic process|
|positive regulation of neuron projection development|
|lipid catabolic process|
|alcohol metabolic process|
|positive regulation of neuron differentiation|
|positive regulation of cell projection organization|
|small molecule catabolic process|
|organic hydroxy compound metabolic process|
|positive regulation of neurogenesis|
|organic cyclic compound catabolic process|
|regulation of neuron projection development|
|positive regulation of nervous system development|
|positive regulation of cell development|
|endocytosis|
|positive regulation of response to external stimulus|
|regulation of neuron differentiation|
|neuron projection development|
|import into cell|
|regulation of plasma membrane bounded cell projection organization|
|regulation of cell projection organization|
|regulation of cellular response to stress|
|neuron development|
|regulation of neurogenesis|
|regulation of nervous system development|
|cell adhesion|
|regulation of cell development|
|biological adhesion|
|positive regulation of cell differentiation|
|neuron differentiation|
|regulation of response to external stimulus|
|plasma membrane bounded cell projection organization|
|cell projection organization|
|positive regulation of cellular component organization|
|lipid metabolic process|
|positive regulation of developmental process|
|regulation of response to stress|
|generation of neurons|
|neurogenesis|
|cell development|
|positive regulation of multicellular organismal process|
|small molecule metabolic process|
|organic substance catabolic process|
|regulation of cell differentiation|
|vesicle-mediated transport|
</modal>
\\

 === CRISPR Data ===
<button type='default' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='default' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
No hits were found.
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
No correlation found to any other genes in chemogenomics.
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 0/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|0/1|
|bile duct|0/28|
|blood|0/28|
|bone|0/26|
|breast|0/33|
|central nervous system|0/56|
|cervix|0/4|
|colorectal|0/17|
|esophagus|0/13|
|fibroblast|0/1|
|gastric|0/16|
|kidney|0/21|
|liver|0/20|
|lung|0/75|
|lymphocyte|0/16|
|ovary|0/26|
|pancreas|0/24|
|peripheral nervous system|0/16|
|plasma cell|0/15|
|prostate|0/1|
|skin|0/24|
|soft tissue|0/9|
|thyroid|0/2|
|upper aerodigestive|0/22|
|urinary tract|0/29|
|uterus|0/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 15970
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 3.45 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='SCARF1 Expression in NALM6 Cells: 3.45'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>