C1orf172 [The Human Chemical-Genetic Interaction Map Project]

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======= C1orf172 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: KDF1
  * **<color #00a2e8>Official Name</color>**: keratinocyte differentiation factor 1
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=126695|126695]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/Q8NAX2|Q8NAX2]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=C1orf172&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20C1orf172|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/616758|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**: N/A
  * **<color #00a2e8>UniProt Summary</color>**:  Plays a role in the regulation of the epidermis formation during early development. Required both as an inhibitor of basal cell proliferation and a promoter of differentiation of basal progenitor cell progeny (By similarity). {ECO:0000250|UniProtKB:A2A9F4}.

<button type='default' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
No Pfam Domain information is available for this gene.
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|limb epidermis development|
|regulation of epidermal cell division|
|keratinocyte development|
|negative regulation of keratinocyte proliferation|
|negative regulation of stem cell proliferation|
|establishment of skin barrier|
|positive regulation of epidermal cell differentiation|
|regulation of water loss via skin|
|regulation of keratinocyte proliferation|
|positive regulation of epidermis development|
|cell leading edge|
|positive regulation of epithelial cell differentiation|
|regulation of epidermal cell differentiation|
|regulation of stem cell proliferation|
|multicellular organismal water homeostasis|
|water homeostasis|
|skin epidermis development|
|mitotic spindle|
|regulation of epidermis development|
|negative regulation of epithelial cell proliferation|
|cell cortex|
|regulation of epithelial cell differentiation|
|morphogenesis of embryonic epithelium|
|regulation of cell division|
|appendage development|
|limb development|
|epithelial cell development|
|keratinocyte differentiation|
|epidermal cell differentiation|
|multicellular organismal homeostasis|
|regulation of epithelial cell proliferation|
|skin development|
|developmental growth|
|growth|
|epidermis development|
|morphogenesis of an epithelium|
|regulation of body fluid levels|
|cell junction|
|tissue morphogenesis|
|embryonic morphogenesis|
|negative regulation of cell population proliferation|
|epithelial cell differentiation|
|positive regulation of cell differentiation|
|embryo development|
|chemical homeostasis|
|epithelium development|
|positive regulation of developmental process|
|regulation of cell population proliferation|
|homeostatic process|
|cell development|
|tissue development|
|regulation of cell differentiation|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='default' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp467|CAY10603 0.55μM R08 exp467]]|1.71|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
No correlation found to any other genes in chemogenomics.
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 0/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|0/1|
|bile duct|0/28|
|blood|0/28|
|bone|0/26|
|breast|0/33|
|central nervous system|0/56|
|cervix|0/4|
|colorectal|0/17|
|esophagus|0/13|
|fibroblast|0/1|
|gastric|0/16|
|kidney|0/21|
|liver|0/20|
|lung|0/75|
|lymphocyte|0/16|
|ovary|0/26|
|pancreas|0/24|
|peripheral nervous system|0/16|
|plasma cell|0/15|
|prostate|0/1|
|skin|0/24|
|soft tissue|0/9|
|thyroid|0/2|
|upper aerodigestive|0/22|
|urinary tract|0/29|
|uterus|0/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 9204
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: -2.64 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='C1ORF172 Expression in NALM6 Cells: -2.64'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>