CCDC78 [The Human Chemical-Genetic Interaction Map Project]

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======= CCDC78 =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: CCDC78
  * **<color #00a2e8>Official Name</color>**: coiled-coil domain containing 78
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=124093|124093]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/A2IDD5|A2IDD5]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=CCDC78&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20CCDC78|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/614666|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**:  The product of this gene contains two coiled-coil domains. The function of this gene is currently unknown. [provided by RefSeq, Sep 2012]. 
  * **<color #00a2e8>UniProt Summary</color>**: N/A

<button type='default' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
No Pfam Domain information is available for this gene.
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|deuterosome|
|de novo centriole assembly involved in multi-ciliated epithelial cell differentiation|
|de novo centriole assembly|
|multi-ciliated epithelial cell differentiation|
|centriole assembly|
|skeletal muscle contraction|
|musculoskeletal movement|
|multicellular organismal movement|
|sarcoplasmic reticulum|
|microtubule organizing center organization|
|sarcolemma|
|striated muscle contraction|
|centriole|
|muscle contraction|
|muscle system process|
|microtubule cytoskeleton organization|
|microtubule-based process|
|epithelial cell differentiation|
|perinuclear region of cytoplasm|
|organelle assembly|
|cytoskeleton organization|
|epithelium development|
|cell projection organization|
|tissue development|
|system process|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='default' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp153|SGC2096 2.6μM R03 exp153]]|-1.72|
|[[:results:exp382|Palbociclib 1μM R07 exp382]]|1.77|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
No correlation found to any other genes in chemogenomics.
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 5/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|0/1|
|909776.0|0/1|
|bile duct|0/28|
|blood|0/28|
|bone|0/26|
|breast|0/33|
|central nervous system|1/56|
|cervix|0/4|
|colorectal|0/17|
|esophagus|0/13|
|fibroblast|0/1|
|gastric|0/16|
|kidney|0/21|
|liver|0/20|
|lung|0/75|
|lymphocyte|0/16|
|ovary|0/26|
|pancreas|0/24|
|peripheral nervous system|1/16|
|plasma cell|0/15|
|prostate|0/1|
|skin|0/24|
|soft tissue|0/9|
|thyroid|0/2|
|upper aerodigestive|0/22|
|urinary tract|1/29|
|uterus|0/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 5667
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 2.96 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='CCDC78 Expression in NALM6 Cells: 2.96'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>