| heteromeric SMAD protein complex |
| positive regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry |
| activin responsive factor complex |
| zygotic specification of dorsal/ventral axis |
| transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity |
| regulation of nodal signaling pathway involved in determination of left/right asymmetry |
| positive regulation of mesoderm development |
| regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry |
| common-partner SMAD protein phosphorylation |
| SMAD protein complex assembly |
| SMAD protein complex |
| primary miRNA binding |
| positive regulation of activin receptor signaling pathway |
| regulation of nodal signaling pathway |
| embryonic foregut morphogenesis |
| primary miRNA processing |
| foregut morphogenesis |
| paraxial mesoderm morphogenesis |
| type I transforming growth factor beta receptor binding |
| dorsal/ventral axis specification |
| I-SMAD binding |
| nodal signaling pathway |
| co-SMAD binding |
| enhancer binding |
| regulation of mesoderm development |
| paraxial mesoderm development |
| signal transduction involved in regulation of gene expression |
| pericardium development |
| R-SMAD binding |
| secondary palate development |
| regulation of activin receptor signaling pathway |
| adrenal gland development |
| activin receptor signaling pathway |
| response to cholesterol |
| production of miRNAs involved in gene silencing by miRNA |
| response to sterol |
| positive regulation of BMP signaling pathway |
| activating transcription factor binding |
| production of small RNA involved in gene silencing by RNA |
| dsRNA processing |
| disordered domain specific binding |
| embryonic axis specification |
| insulin secretion |
| transforming growth factor beta receptor binding |
| tau protein binding |
| embryonic cranial skeleton morphogenesis |
| endoderm formation |
| gene silencing by miRNA |
| positive regulation of epithelial to mesenchymal transition |
| digestive tract morphogenesis |
| phosphatase binding |
| mesenchyme morphogenesis |
| SMAD binding |
| SMAD protein signal transduction |
| posttranscriptional gene silencing by RNA |
| peptide hormone secretion |
| posttranscriptional gene silencing |
| embryonic pattern specification |
| somatic stem cell population maintenance |
| cranial skeletal system development |
| mesoderm formation |
| mesoderm morphogenesis |
| hormone secretion |
| pancreas development |
| negative regulation of transforming growth factor beta receptor signaling pathway |
| endoderm development |
| negative regulation of cellular response to transforming growth factor beta stimulus |
| hormone transport |
| dorsal/ventral pattern formation |
| regulation of epithelial to mesenchymal transition |
| axis specification |
| ureteric bud development |
| mesonephric epithelium development |
| mesonephric tubule development |
| gene silencing by RNA |
| regulation of BMP signaling pathway |
| post-embryonic development |
| roof of mouth development |
| mesonephros development |
| embryonic skeletal system morphogenesis |
| organ growth |
| transforming growth factor beta receptor signaling pathway |
| double-stranded DNA binding |
| positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway |
| formation of primary germ layer |
| regulation of transforming growth factor beta receptor signaling pathway |
| regulation of cellular response to transforming growth factor beta stimulus |
| negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway |
| endocrine system development |
| mesoderm development |
| embryonic skeletal system development |
| kidney epithelium development |
| digestive tract development |
| stem cell population maintenance |
| maintenance of cell number |
| response to glucose |
| response to hexose |
| digestive system development |
| negative regulation of cellular response to growth factor stimulus |
| response to monosaccharide |
| gene silencing |
| cellular response to transforming growth factor beta stimulus |
| protein secretion |
| gastrulation |
| establishment of protein localization to extracellular region |
| response to transforming growth factor beta |
| protein localization to extracellular region |
| lung development |
| signal release |
| response to carbohydrate |
| respiratory tube development |
| peptide secretion |
| respiratory system development |
| transmembrane receptor protein serine/threonine kinase signaling pathway |
| transcription factor complex |
| anterior/posterior pattern specification |
| mesenchyme development |
| response to alcohol |
| regulation of transmembrane receptor protein serine/threonine kinase signaling pathway |
| regulation of gene expression, epigenetic |
| nuclear chromatin |
| skeletal system morphogenesis |
| cell fate commitment |
| kidney development |
| regulation of cellular response to growth factor stimulus |
| protein deubiquitination |
| renal system development |
| embryonic organ morphogenesis |
| ubiquitin protein ligase binding |
| protein modification by small protein removal |
| urogenital system development |
| regionalization |
| transcription factor binding |
| regulation of binding |
| in utero embryonic development |
| ncRNA processing |
| developmental growth |
| growth |
| chromatin binding |
| gland development |
| embryonic organ development |
| pattern specification process |
| DNA-binding transcription activator activity, RNA polymerase II-specific |
| ncRNA metabolic process |
| wound healing |
| protein heterodimerization activity |
| skeletal system development |
| cellular response to growth factor stimulus |
| RNA polymerase II proximal promoter sequence-specific DNA binding |
| posttranscriptional regulation of gene expression |
| heart development |
| response to growth factor |
| regulation of hormone levels |
| tissue morphogenesis |
| embryonic morphogenesis |
| response to wounding |
| protein-containing complex |
| chordate embryonic development |
| embryo development ending in birth or egg hatching |
| tube morphogenesis |
| DNA-binding transcription factor activity |
| negative regulation of cell population proliferation |
| enzyme linked receptor protein signaling pathway |
| cellular protein-containing complex assembly |
| tube development |
| response to lipid |
| negative regulation of transcription by RNA polymerase II |
| circulatory system development |
| RNA processing |
| protein homodimerization activity |
| anatomical structure formation involved in morphogenesis |
| response to organic cyclic compound |
| animal organ morphogenesis |
| positive regulation of cell differentiation |
| protein phosphorylation |
| embryo development |
| protein modification by small protein conjugation or removal |
| secretion by cell |
| export from cell |
| epithelium development |
| cell-cell signaling |
| secretion |
| negative regulation of transcription, DNA-templated |
| positive regulation of transcription by RNA polymerase II |
| cellular response to endogenous stimulus |
| negative regulation of nucleic acid-templated transcription |
| negative regulation of RNA biosynthetic process |
| negative regulation of signal transduction |
| proteolysis |
| phosphorylation |
| negative regulation of RNA metabolic process |
| negative regulation of cell communication |
| negative regulation of signaling |
| positive regulation of developmental process |
| negative regulation of cellular macromolecule biosynthetic process |
| negative regulation of nucleobase-containing compound metabolic process |
| DNA binding |
| negative regulation of macromolecule biosynthetic process |
| response to endogenous stimulus |
| protein transport |
| negative regulation of cellular biosynthetic process |
| peptide transport |
| positive regulation of transcription, DNA-templated |
| negative regulation of biosynthetic process |
| response to oxygen-containing compound |
| protein-containing complex assembly |
| DNA-binding transcription factor activity, RNA polymerase II-specific |
| amide transport |
| establishment of protein localization |
| regulation of cell population proliferation |
| negative regulation of response to stimulus |
| positive regulation of nucleic acid-templated transcription |
| positive regulation of RNA biosynthetic process |
| positive regulation of signal transduction |
| RNA metabolic process |
| intracellular signal transduction |
| negative regulation of gene expression |
| positive regulation of RNA metabolic process |
| positive regulation of multicellular organismal process |
| tissue development |
| regulation of cell differentiation |
| positive regulation of cell communication |
| positive regulation of signaling |
| nitrogen compound transport |
| protein-containing complex subunit organization |
| positive regulation of nucleobase-containing compound metabolic process |
| positive regulation of macromolecule biosynthetic process |
| positive regulation of cellular biosynthetic process |
| positive regulation of gene expression |
| gene expression |
| positive regulation of biosynthetic process |