RPS17L [The Human Chemical-Genetic Interaction Map Project]

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
======= RPS17L =======


== Gene Information ==
  * **<color #00a2e8>Official Symbol</color>**: RPS17
  * **<color #00a2e8>Official Name</color>**: ribosomal protein S17
  * **<color #00a2e8>Aliases and Previous Symbols</color>**: N/A
  * **<color #00a2e8>Entrez ID</color>**: [[https://www.ncbi.nlm.nih.gov/gene/?term=6218|6218]]
  * **<color #00a2e8>UniProt</color>**: [[https://www.uniprot.org/uniprot/P08708|P08708]]
  * **<color #00a2e8>Interactions</color>**: [[https://thebiogrid.org/search.php?search=RPS17L&organism=9606|BioGRID]]
  * **<color #00a2e8>PubMed articles</color>**: [[https://www.ncbi.nlm.nih.gov/pubmed/?term=gene%20RPS17L|Open PubMed]]
  * **<color #00a2e8>OMIM</color>**: [[https://omim.org/entry/180472|Open OMIM]]

== Function Summary ==
  * **<color #00a2e8>Entrez Summary</color>**:  Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of four RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S17E family of ribosomal proteins and is located in the cytoplasm. Mutations in this gene cause Diamond-Blackfan anemia 4. Alternative splicing of this gene results in multiple transcript variants. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Apr 2014]. 
  * **<color #00a2e8>UniProt Summary</color>**: N/A

<button type='primary' size='sm' modal='Pfam_Domains'>Pfam Domains</button>
<button type='primary' size='sm' modal='GO_terms'>GO Terms</button>


<modal id='Pfam_Domains' size='lg' title='Pfam Domains'>
|Ribosomal S17e|
</modal>

<modal id='GO_terms' size='lg' title='GO Terms'>
|ribosome|
|cytosolic small ribosomal subunit|
|ribosomal small subunit biogenesis|
|erythrocyte homeostasis|
|SRP-dependent cotranslational protein targeting to membrane|
|cotranslational protein targeting to membrane|
|myeloid cell homeostasis|
|protein targeting to ER|
|establishment of protein localization to endoplasmic reticulum|
|viral transcription|
|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|
|viral gene expression|
|protein localization to endoplasmic reticulum|
|translational initiation|
|protein targeting to membrane|
|structural constituent of ribosome|
|nuclear-transcribed mRNA catabolic process|
|homeostasis of number of cells|
|rRNA processing|
|mRNA catabolic process|
|rRNA metabolic process|
|RNA catabolic process|
|establishment of protein localization to membrane|
|synapse|
|ribosome biogenesis|
|protein targeting|
|nucleobase-containing compound catabolic process|
|translation|
|ncRNA processing|
|peptide biosynthetic process|
|focal adhesion|
|establishment of protein localization to organelle|
|heterocycle catabolic process|
|cellular nitrogen compound catabolic process|
|aromatic compound catabolic process|
|ribonucleoprotein complex biogenesis|
|ncRNA metabolic process|
|protein localization to membrane|
|organic cyclic compound catabolic process|
|amide biosynthetic process|
|peptide metabolic process|
|mRNA metabolic process|
|viral process|
|protein localization to organelle|
|symbiotic process|
|cellular amide metabolic process|
|interspecies interaction between organisms|
|RNA processing|
|cellular macromolecule catabolic process|
|intracellular protein transport|
|macromolecule catabolic process|
|RNA binding|
|organonitrogen compound biosynthetic process|
|protein transport|
|intracellular transport|
|peptide transport|
|amide transport|
|cellular protein localization|
|cellular macromolecule localization|
|establishment of protein localization|
|cellular nitrogen compound biosynthetic process|
|homeostatic process|
|RNA metabolic process|
|cellular macromolecule biosynthetic process|
|negative regulation of gene expression|
|macromolecule biosynthetic process|
|organic substance catabolic process|
|cellular catabolic process|
|establishment of localization in cell|
|nitrogen compound transport|
|membrane|
|gene expression|
</modal>
\\

 === CRISPR Data ===
<button type='primary' size='small' modal='Compound_Hit'>Compound Hit</button>
<button type='primary' size='small' modal='Most_Correlated_Genes'>Most Correlated Genes in Chemogenomics</button>
<button type='primary' size='small' modal='Essential_Avana'>Tissues where Essential in the Avana Dataset (DepMap 20Q1)</button>

<modal id='Compound_Hit' size='lg' title='Compound Hit'>
^Screen^Score^
|[[:results:exp492|iCRT14 30μM R08 exp492]]|-3.28|
|[[:results:exp307|Rapamycin 2μM plus Cyclosporin-A 3μM R07 exp307]]|-3.26|
|[[:results:exp155|UNC1999 2μM R03 exp155]]|-2.5|
|[[:results:exp294|Nutlin-3A 1.6μM R06 exp294]]|-2.26|
|[[:results:exp33|Rotenone 2μM R00 exp33]]|-2.1|
|[[:results:exp347|Cyclosporin-A 0.8μM R07 exp347]]|-2.07|
|[[:results:exp489|Hippuristanol 0.12μM R08 exp489 no dilution day6]]|-2.04|
|[[:results:exp124|GSK343 3μM R03 exp124]]|-2.02|
|[[:results:exp503|Mitomycin-C 0.06μM R08 exp503]]|-1.96|
|[[:results:exp135|MS023 7μM R03 exp135]]|-1.9|
|[[:results:exp516|Pyrazinamide 100μM R08 exp516]]|-1.79|
|[[:results:exp96|BI-2536 0.02μM R03 exp96]]|-1.73|
|[[:results:exp360|Genistein 15μM R07 exp360]]|-1.72|
|[[:results:exp497|Lead acetate 2000μM R08 exp497]]|-1.72|
|[[:results:exp518|RK-33 8μM R08 exp518]]|-1.7|
|[[:results:exp125|GSK461364A 0.005μM R03 exp125]]|1.75|
|[[:results:exp183|IU1-C 25μM R04 exp183]]|1.81|
|[[:results:exp51|Nifuroxazide 1μM R01 exp51]]|2.04|
|[[:results:exp97|BI-6727 0.0125μM R03 exp97]]|2.13|
|[[:results:exp175|3-Bromopyruvate 7μM R04 exp175]]|2.14|
|[[:results:exp41|BI-2536 0.001μM R01 exp41]]|2.31|
</modal>

<modal id='Most_Correlated_Genes' size='lg' title='Most Correlated Genes in Chemogenomics'>
^Gene^Correlation^
|[[:human genes:r:rrm1|RRM1]]|0.484|
|[[:human genes:r:rps27a|RPS27A]]|0.423|
</modal>

<modal id='Essential_Avana' size='lg' title='Tissues where Essential in the Avana Dataset (DepMap 20Q1)'>
Global Fraction of Cell Lines Where Essential: 734/739
^Tissue^Fraction Of Cell Lines Where Essential^
|1290807.0|1/1|
|909776.0|1/1|
|bile duct|27/28|
|blood|26/28|
|bone|26/26|
|breast|33/33|
|central nervous system|56/56|
|cervix|4/4|
|colorectal|17/17|
|esophagus|12/13|
|fibroblast|1/1|
|gastric|16/16|
|kidney|20/21|
|liver|20/20|
|lung|75/75|
|lymphocyte|16/16|
|ovary|26/26|
|pancreas|24/24|
|peripheral nervous system|16/16|
|plasma cell|15/15|
|prostate|1/1|
|skin|24/24|
|soft tissue|9/9|
|thyroid|2/2|
|upper aerodigestive|22/22|
|urinary tract|29/29|
|uterus|5/5|
</modal>

== Essentiality in NALM6  ==
    * **<color #00a2e8>Essentiality Rank</color>**: 1275
    * **<color #00a2e8>Expression level (log2 read counts)</color>**: 9.11 
<button type='primary' size='small' modal='Dist_expr'>Expression Distribution</button>
<modal id='Dist_expr' size='lg' title='RPS17L Expression in NALM6 Cells: 9.11'>
{{:chemogenomics:nalm6 dist.png?nolink |}}
</modal>