| GO Term | Fold Change | Genes |
| RNA polymerase II CTD heptapeptide repeat kinase activity | 184.21 | CDK13,CCNK,CDK8 |
| nuclear cyclin-dependent protein kinase holoenzyme complex | 118.42 | CDK13,CCNK,CDK8 |
| RNA polymerase II CTD heptapeptide repeat modifying activity | 97.52 | CDK13,CCNK,CDK8 |
| cyclin-dependent protein kinase activity | 59.21 | CDK13,CCNK,CDK8 |
| cyclin-dependent protein serine/threonine kinase activity | 59.21 | CDK13,CCNK,CDK8 |
| SWI/SNF complex | 57.17 | RB1,ARID1A,SMARCC1 |
| cyclin-dependent protein kinase holoenzyme complex | 41.71 | CCNQ,CDK13,CCNK,CDK8 |
| serine/threonine protein kinase complex | 21.93 | CCNQ,CDK13,CCNK,CDK8,TGFBR2 |
| protein kinase complex | 18.93 | CCNQ,CDK13,CCNK,CDK8,TGFBR2 |
| nuclear speck | 12.22 | SPOP,CDK13,CBLL1,YLPM1,SETD1A,EIF4ENIF1,COP1,RBM10,ZNF217 |
| mRNA metabolic process | 7.52 | CNOT8,RPRD1B,HNRNPH1,CDK13,CBLL1,SNRPA,RBM38,RBM10 |
| nuclear body | 7.48 | RB1,SPOP,CDK13,CBLL1,YLPM1,SETD1A,EIF4ENIF1,NAA15,COP1,RBM10,ZNF217 |
| transferase complex | 6.67 | SPOP,CCNQ,CDK13,CCNK,CBLL1,SETD1A,NAA15,COP1,CDK8,TGFBR2 |