PTCD3
Gene Information
- Official Symbol: PTCD3
- Official Name: pentatricopeptide repeat domain 3
- Aliases and Previous Symbols: N/A
- Entrez ID: 55037
- UniProt: Q96EY7
- Interactions: BioGRID
- PubMed articles: Open PubMed
- OMIM: Open OMIM
Function Summary
- Entrez Summary: N/A
- UniProt Summary: Mitochondrial RNA-binding protein that has a role in mitochondrial translation. {ECO:0000269|PubMed:19427859}.
Pfam Domains GO Terms
Pfam Domains
No Pfam Domain information is available for this gene.
GO Terms
| ribosomal small subunit binding |
| rRNA binding |
| ribosome |
| mitochondrial translational elongation |
| mitochondrial translational termination |
| translational termination |
| mitochondrial translation |
| translational elongation |
| cellular protein complex disassembly |
| mitochondrial gene expression |
| protein-containing complex disassembly |
| regulation of translation |
| translation |
| mitochondrial inner membrane |
| cellular component disassembly |
| regulation of cellular amide metabolic process |
| peptide biosynthetic process |
| posttranscriptional regulation of gene expression |
| amide biosynthetic process |
| peptide metabolic process |
| cellular amide metabolic process |
| mitochondrion |
| RNA binding |
| organonitrogen compound biosynthetic process |
| cellular nitrogen compound biosynthetic process |
| cellular macromolecule biosynthetic process |
| macromolecule biosynthetic process |
| protein-containing complex subunit organization |
| gene expression |
CRISPR Data
Compound Hit Most Correlated Genes in Chemogenomics Tissues where Essential in the Avana Dataset (DepMap 20Q1)
Compound Hit
| Screen | Score |
|---|---|
| Ribavirin 10μM R01 exp52 | 1.85 |
| UM0125461 0.74μM R02 exp84 | 1.91 |
| Hydroxyurea 100μM R07 exp329 | 1.95 |
| BI-D1870 3.15μM R02 exp66 | 2.08 |
Most Correlated Genes in Chemogenomics
| Gene | Correlation |
|---|---|
| MRPL45 | 0.554 |
| DDX28 | 0.531 |
| PET117 | 0.531 |
| MRPL3 | 0.524 |
| COA3 | 0.522 |
| TFB1M | 0.522 |
| TRUB2 | 0.522 |
| QRSL1 | 0.522 |
| METTL17 | 0.514 |
| MRPS16 | 0.511 |
| ERAL1 | 0.51 |
| MRPS27 | 0.51 |
| FTSJ2 | 0.507 |
| MRP63 | 0.499 |
| NARS2 | 0.497 |
| MRPL17 | 0.493 |
| POLRMT | 0.491 |
| MRPS21 | 0.49 |
| TIMMDC1 | 0.488 |
| NDUFB11 | 0.488 |
| MRPS12 | 0.487 |
| DAP3 | 0.485 |
| MRPS25 | 0.485 |
| RPUSD3 | 0.483 |
| ACAD9 | 0.482 |
| CHCHD1 | 0.481 |
| FASTKD2 | 0.478 |
| HMGXB3 | 0.477 |
| HSD17B10 | 0.475 |
| NDUFAF7 | 0.473 |
| NDUFS2 | 0.467 |
| MRPL33 | 0.466 |
| MRPS6 | 0.466 |
| MRPL47 | 0.466 |
| MTPAP | 0.465 |
| NDUFAF3 | 0.464 |
| MALSU1 | 0.464 |
| MRPS34 | 0.464 |
| CARS2 | 0.463 |
| MRPL42 | 0.462 |
| NDUFA3 | 0.462 |
| RARS2 | 0.461 |
| MRPS22 | 0.459 |
| XPNPEP3 | 0.458 |
| PET112 | 0.457 |
| MRPL13 | 0.455 |
| NUBPL | 0.455 |
| AIFM1 | 0.454 |
| SSBP1 | 0.454 |
| MARS2 | 0.454 |
| WBSCR16 | 0.454 |
| NDUFC2 | 0.453 |
| MRPL23 | 0.453 |
| COA6 | 0.452 |
| MRPL22 | 0.452 |
| VARS2 | 0.45 |
| MRPL51 | 0.449 |
| MTIF2 | 0.449 |
| TFAM | 0.449 |
| MRPS14 | 0.449 |
| PARS2 | 0.443 |
| MRPL15 | 0.443 |
| SCO2 | 0.441 |
| NDUFA1 | 0.44 |
| NDUFB9 | 0.439 |
| MRPL44 | 0.439 |
| YARS2 | 0.439 |
| GTPBP8 | 0.439 |
| SELRC1 | 0.438 |
| LRPPRC | 0.438 |
| MRPS18B | 0.434 |
| MRPS18A | 0.433 |
| MRPL11 | 0.432 |
| NSUN4 | 0.431 |
| MTERFD2 | 0.43 |
| NDUFC1 | 0.429 |
| MRPL48 | 0.428 |
| RBFA | 0.428 |
| GTPBP10 | 0.427 |
| GFM1 | 0.426 |
| LARS2 | 0.423 |
| TARS2 | 0.423 |
| MRPS10 | 0.423 |
| MPV17L2 | 0.422 |
| MRPL37 | 0.422 |
| MRPS26 | 0.422 |
| C1QBP | 0.422 |
| MRPS9 | 0.421 |
| RTN4IP1 | 0.421 |
| WARS2 | 0.42 |
| FASTKD5 | 0.419 |
| MRPS7 | 0.417 |
| ECSIT | 0.417 |
| MTERFD1 | 0.417 |
| TFB2M | 0.417 |
| GTPBP6 | 0.416 |
| NDUFV1 | 0.415 |
| MRPL35 | 0.415 |
| MRPL41 | 0.414 |
| PREPL | 0.414 |
| NDUFB6 | 0.414 |
| AARS2 | 0.414 |
| MTRF1L | 0.414 |
| MRPL49 | 0.412 |
| MTG2 | 0.412 |
| GRSF1 | 0.412 |
| SLC31A1 | 0.411 |
| NDUFB10 | 0.41 |
| EARS2 | 0.409 |
| MRPL21 | 0.409 |
| DARS2 | 0.409 |
| NDUFB4 | 0.408 |
| NDUFA2 | 0.408 |
| MCAT | 0.407 |
| COX6B1 | 0.406 |
| MRPL43 | 0.406 |
| COX6A1 | 0.406 |
| RMND1 | 0.403 |
| MRPL39 | 0.403 |
| NDUFS3 | 0.402 |
| MRPL53 | 0.402 |
| C12orf65 | 0.401 |
| CLPP | 0.401 |
| COX18 | 0.401 |
| COQ2 | 0.401 |
Tissues where Essential in the Avana Dataset (DepMap 20Q1)
Global Fraction of Cell Lines Where Essential: 183/739
| Tissue | Fraction Of Cell Lines Where Essential |
|---|---|
| 1290807.0 | 0/1 |
| 909776.0 | 1/1 |
| bile duct | 10/28 |
| blood | 6/28 |
| bone | 6/26 |
| breast | 11/33 |
| central nervous system | 11/56 |
| cervix | 1/4 |
| colorectal | 4/17 |
| esophagus | 6/13 |
| fibroblast | 0/1 |
| gastric | 5/16 |
| kidney | 4/21 |
| liver | 7/20 |
| lung | 23/75 |
| lymphocyte | 3/16 |
| ovary | 2/26 |
| pancreas | 5/24 |
| peripheral nervous system | 2/16 |
| plasma cell | 2/15 |
| prostate | 0/1 |
| skin | 7/24 |
| soft tissue | 2/9 |
| thyroid | 0/2 |
| upper aerodigestive | 5/22 |
| urinary tract | 8/29 |
| uterus | 1/5 |
Essentiality in NALM6
- Essentiality Rank: 584
- Expression level (log2 read counts): 8.23
Expression Distribution
PTCD3 Expression in NALM6 Cells: 8.23