Aphidicolin 0.4μM R08 exp440

Inhibits DNA polymerases Polα, Polδ, Polϵ and Polζ

Class / Subclass 1: DNA Damage, Repair and Replication / Replication Inhibitor
Class / Subclass 2: Cell Cycle / Replication Inhibitor
Class / Subclass 3: Infectious Disease / Antiviral

Compound References

PubChem Name: Aphidicolin
Synonyms: N/A
CAS #: 38966-21-1
PubChem CID: 457964
IUPAC: (1S,2S,5R,6R,7R,10S,12R,13R)-6,13-bis(hydroxymethyl)-2,6-dimethyltetracyclo[10.3.1.01,10.02,7]hexadecane-5,13-diol
INCHI Name: InChI=1S/C20H34O4/c1-17(11-21)15-4-3-13-9-14-10-19(13,7-8-20(14,24)12-22)18(15,2)6-5-16(17)23/h13-16,21-24H,3-12H2,1-2H3/t13-,14+,15-,16+,17-,18-,19-,20-/m0/s1
INCHI Key: NOFOAYPPHIUXJR-APNQCZIXSA-N
Molecular Weight: 338.5
Canonical SMILES: CC12CCC(C(C1CCC3C24CCC(C(C3)C4)(CO)O)(C)CO)O
Isomeric SMILES: C[C@]12CC[C@H]([C@@]([C@@H]1CC[C@@H]3[C@@]24CC[C@@]([C@H](C3)C4)(CO)O)(C)CO)O
Molecular Formula: C20H34O4

Compound Supplier

Supplier Name: Toronto Research Chemicals
Catalog #: A726260
Lot #: 1-TSS-153-1

Compound Characterization

HRMS (ESI-TOF) m/z: (M+Na)+ Calcd for C20H34O4 361.23493; found 361.23594

Dose Response Curve

Platform ID: Aphidicolin_A
Min: -33.0803; Max: 90.7760

IC	Concentration (µM)
IC10	0.2361
IC20	0.3133
IC30	0.3781
IC40	0.4411
IC50	0.5081
IC60	0.5853
IC70	0.6828
IC80	0.8240
IC90	1.0930

Screen Summary

Round: 08
Dose: 400nM
Days of incubation: 8
Doublings: 0.9
Numbers of reads: 16794216

Sensitive/Resistant hits (FDR<0.05)	CRANKS	Score Plot	Top 30 Genes	Screen Similarity	Top 30 Sensitive GO terms	Top 30 Resistant GO terms
26/94	Scores	View	View	View	View	View

Gene	CRANKS Score	FDR
GTPBP2	-4.72	<0.01
OTUB1	-3.78	<0.01
DERA	-3.72	<0.01
KPNA4	-3.37	<0.01
MSI2	-3.23	<0.01
ANKRD32	-3.11	<0.01
RECQL5	-3.00	<0.01
DCK	-2.91	<0.01
RING1	-2.74	0.02
TMOD4	-2.72	0.02
ALDH16A1	-2.71	0.01
UBE2N	-2.63	0.02
SPEN	-2.61	0.02
UXS1	-2.58	0.02
VPS25	-2.53	0.27
GIGYF2	-2.52	0.04
SMG7	-2.52	0.04
INTS12	-2.51	0.02
PDS5B	-2.49	0.02
PCGF1	-2.48	0.02
TRAF2	-2.47	0.04
PSME3	-2.47	0.02
SMARCAL1	-2.44	0.03
TRMT44	-2.44	0.03
CSE1L	-2.42	0.14
PPIL1	-2.41	0.06
UBE2D2	-2.41	0.03
PSMB1	-2.36	0.10
UBE2E1	-2.33	0.04
OR51S1	-2.33	0.04
ZNF330	2.83	<0.01
CYCS	2.83	<0.01
SLC39A10	2.88	<0.01
KLF16	2.92	<0.01
CD19	2.94	<0.01
NSD1	2.97	<0.01
TP53	2.99	<0.01
ATP2A2	3.00	0.12
IRF1	3.02	0.00
RAD23B	3.06	<0.01
TRMT61A	3.18	<0.01
RICTOR	3.23	0.00
APAF1	3.25	0.00
RMI2	3.27	0.00
DOHH	3.34	0.00
KCTD5	3.36	0.00
CD81	3.36	0.00
MARCH5	3.39	0.00
AHCYL1	3.44	0.00
MLST8	3.57	0.00
HCCS	3.61	0.00
CASP9	3.68	0.00
YARS2	3.68	0.00
VDAC2	3.76	0.00
SLFN11	3.93	0.00
PLAA	4.10	0.00
PIK3CD	4.25	0.00
MAPKAP1	4.59	0.00
BAK1	5.73	0.00
FBXO11	5.93	0.00

Screen	Correlation	Plot
Olaparib 4μM R08 exp512	0.16	View
Benzoate 20000μM R08 exp456	0.152	View
Hippuristanol 0.12μM R08 exp488	0.146	View
Mitomycin-C 0.06μM R08 exp503	0.14	View
Hippuristanol 0.12μM R08 exp489 no dilution day6	0.138	View
Hydroxyurea 100μM R07 exp329	0.134	View
Atovaquone 15μM R08 exp451	0.13	View
CI-1040 9.5μM R08 exp472	0.126	View
JQ1 0.8μM R08 exp435	0.122	View
Thimerosal 0.85μM R08 exp529	0.112	View
Doxorubicin 0.02μM R08 exp478	0.109	View
MS023 7μM R03 exp135	0.103	View
Trimetrexate 0.03μM R08 exp535	0.103	View
Staurosporine 0.02μM R08 exp524	0.1	View
Bleomycin 5μM R08 exp459	0.1	View
PU-H71 1μM R08 exp515	0.1	View
MS023 2μM R03 exp134	0.099	View
GSK-J4 1.5μM R08 exp441	0.098	View
Tanespimycin 14μM R08 exp527	0.098	View
Pterostilbene 16μM R02 exp78	0.096	View
THZ1 0.06μM R08 exp531	0.095	View
Sulforaphane 9μM R08 exp525	0.094	View
Artemisinin 50μM R08 exp450	0.092	View
SNS-032 15μM R08 exp443	0.092	View
Dorsomorphin 5μM R07 exp357	0.085	View
Etoposide 0.3μM R05 exp199	0.085	View
Diepoxybutane 3μM R07 exp354	0.084	View
Quercetin 20μM R08 exp517	0.082	View
Sulforaphane 9μM R08 exp526 no dilution day6	0.081	View
Pimelic-diphenylamide-106 5μM R00 exp28	0.081	View
Ethanol 0.01 R05 exp234	0.08	View
UM131593 0.2μM R03 exp106	0.079	View
GSK626616 14μM R08 exp485	0.079	View
Deferoxamine 11μM R07 exp350	0.078	View
CR131-b 0.005μM R08 exp474	0.078	View
Resveratrol 16μM R03 exp147	0.076	View
LY2090314 0.003μM R08 exp500 no dilution day6	0.074	View
RO-3307 4.7μM R02 exp80	0.072	View
CB-5083 0.4μM R08 exp468	0.071	View
Etoposide 1μM R00 exp19	0.071	View
Nutlin-3A 1.6μM R06 exp294	0.07	View
Rucaparib 6.5μM R08 exp520	0.069	View
TIC10 10μM R08 exp532	0.066	View
UM0125461 0.74μM R02 exp84	0.065	View
Milciclib 2μM R08 exp502	0.064	View
UM0129480 7μM R02 exp85	0.064	View
GSK461364A 0.1μM R03 exp126	0.064	View
iCRT14 30μM R08 exp492	0.063	View
Rotenone 20μM R00 exp34	0.062	View
LLY-283 2.6μM R06 exp290	0.062	View
Dinaciclib 0.007μM R07 exp355	0.062	View
ONC212 0.15μM R08 exp513	0.06	View
Latrunculin-B 10μM R07 exp374	0.058	View
TRAIL 50ng/ml R00 exp36	0.057	View
ML-792 0.2μM R08 exp505	0.056	View
LY2090314 0.003μM R08 exp499	0.055	View
BVD-523 15μM R02 exp67	0.054	View
Genistein 15μM R07 exp360	0.054	View
Lead acetate 2000μM R08 exp497	0.053	View
MLN-4924 0.2μM R00 exp21	0.052	View
CoCl2 18μM R07 exp346	0.052	View
Cryptotanshinone 12μM R05 exp227	0.051	View
AICAR 240μM R05 exp211	0.115	View
AICAR 240μM R03 exp116	0.113	View
5-Fluorouracil 20μM R00 exp2	0.107	View
Actinomycin-D 0.001μM R00 exp3	0.091	View
Ammonium tetrathiomolybdate 10μM R08 exp448	0.071	View
6-Thio-2-deoxyguanosine 2μM R06 exp259	0.068	View
42°C R08 exp539	0.062	View
Amiloride 100μM R08 exp447	0.062	View
3-Bromopyruvate 7μM R04 exp175	0.054	View

GO Term	Fold Change	Genes
apoptosome	552.63	CASP9,APAF1
activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c	331.58	CASP9,APAF1,CYCS
glial cell apoptotic process	276.32	CASP9,TP53
porin activity	221.05	BAK1,VDAC2
TORC2 complex	207.24	MAPKAP1,MLST8,RICTOR
positive regulation of mitochondrial membrane permeability	59.21	BAK1,VDAC2,TP53
positive regulation of membrane permeability	53.48	BAK1,VDAC2,TP53
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	50.24	BAK1,APAF1,TP53
TOR signaling	47.37	MAPKAP1,MLST8,RICTOR
intrinsic apoptotic signaling pathway	17.27	BAK1,CASP9,APAF1,TP53,CYCS
cellular response to external stimulus	10.14	BAK1,MAPKAP1,MLST8,RICTOR,IRF1,TP53

Aphidicolin 0.4μM R08 exp440

Mechanism of Action

Technical Notes

Compound References

Compound Supplier

Compound Characterization

Dose Response Curve

Screen Summary

Screen Results